Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4024 ATGGATTCAGTCAAAGTAATATCCACAACTACAATCAAAGCACCAATTCACAACTCAACAACTTGTGATTCTCATCAAATAATCAACTTAACACCATGGGATCTTCAATTCCTCCCACTTGGTACCATCCAAAAAGGCCTTCTTTTCCACCAACCAATTCCAATCCCAAACCAAATCAACCACCTCAAACATACCCTTTCCACCACTCTCTCTTTTTTCCCACCCTTAACTGGCCGTCTCATAATCACCACCACCACCACCACCACCACCACACCCAACAATACTTCATGTTCCATCATTTGTAACAACCTTGGTGTTCTCTTTATTCACGCCAAAGCAAACAACACATCCGTAACCGACATTCTTCAACCGAACAACATTCCTCCAATTGTTCACTCATTTTTCCCACTTAACGGCGTTAAAAACTACCAAGCCACTTCAGAGCCAATTCTAGCTATCCAATTAACAGAGTTAACTAACGGTATCTTCATTGGTTTCACTCTTAACCACGTTGTTTCTGACGGTAAATCGTTTTGGCATTTCGTTAATTCTTGGTCACAAATCTCAAAAGATTCTCACAAATTACCCAAACTACCCTCACTTCAACGTTGGTTCCCAAACAACATTCAAACTCCAATACTCTTCCCTTTCACTATAACAGAATCAGAATCACAAGATCAACGGTCGAAACTTCCCGAAAGGATCTTCCATTTTACGAAAGCAAAACTAGAAGAACTGAAATCAAAAGCTAATGAAGAAATCAAAACAGAGAAAACTAAAATATCTTCGCTTCAAGCGCTATTATCTCACGTTTGGCGTTCGATTATTCGATGCAAAAAACTCGATCCACAAGAAGATTTTCGGTATGTGTTGATAATAGGAGTTAGACCAAGGATGAATCCGCCACTCAACGAGGATTATTTTGGAAATGCTGCAATGATTGGTGATGTGAGGATGAAAGTAGGGGAAATTCTGGAATGTGGAATTGGAAAAGTTGCTTTGGAGATGAATAAGATGATTTTGTTACATTCTGATGAGAAAATTAAGAATGATTATGAGTGTTGGTTGAGAATGCCGAGGTTGTTTTCGATTAGTGGTTTGACGAGTTGTAATTCGTTGGGGACGAGTAGTTCTCCGAGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGGAAGCCTGTCGCGGTTCGAAGTGGGGGTGCGAATAAAAGTAATGGGAAGATTACTTTGTTTGCTGGGGTTGATGAAGGTAGTATTGATGTTGAAGTTTGTCTTTCTTATGAGATTTTGGAGGCTTTGGGAAATGACAATGAGTTTGTGGTTCCAATTTCTGAGTAA 1338 0.3954 MDSVKVISTTTIKAPIHNSTTCDSHQIINLTPWDLQFLPLGTIQKGLLFHQPIPIPNQINHLKHTLSTTLSFFPPLTGRLIITTTTTTTTTPNNTSCSIICNNLGVLFIHAKANNTSVTDILQPNNIPPIVHSFFPLNGVKNYQATSEPILAIQLTELTNGIFIGFTLNHVVSDGKSFWHFVNSWSQISKDSHKLPKLPSLQRWFPNNIQTPILFPFTITESESQDQRSKLPERIFHFTKAKLEELKSKANEEIKTEKTKISSLQALLSHVWRSIIRCKKLDPQEDFRYVLIIGVRPRMNPPLNEDYFGNAAMIGDVRMKVGEILECGIGKVALEMNKMILLHSDEKIKNDYECWLRMPRLFSISGLTSCNSLGTSSSPRFDVYGNDFGWGKPVAVRSGGANKSNGKITLFAGVDEGSIDVEVCLSYEILEALGNDNEFVVPISE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4024 445 Gene3D - 217 435 IPR023213 -
Tpr4g4024 445 Pfam Transferase family 4 439 - -
Tpr4g4024 445 Gene3D - 2 213 IPR023213 -
Tpr4g4024 445 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 3 441 - -
Tpr4g4024 445 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 3 441 - -
Tpr4g4024 445 Coils Coil 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4024 Tpr-Chr4 46883299 46885132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4024 62 431 Monolignol Biosynthesis Gene Families AT5G48930 25.064 4.18e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4024 - - gmx:100500257 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4024 4 46883299 46885132 Tpr4g4024 4 46883299 46885132 ECH