Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4016 ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAAGAAGAATCTGAAAGATGTTCCAAGACATCAATAGAAGGAGATGATGAAAAAGGCAAAAGGGTTGGTGGATCTATTTCAAATTCAAGCTCTTCAGCCATAGTAATTGAAGAAGATTCAGAAGAAGATCAACAAGAACAAGAACATAAAAACAGAACCATGTTGATGAAGAAAAGAAACAGTAAAATATTTGGTTTCTCTGTTACTCAAGATGAAGAACAAGAAGAAGAAGAAGAAGAAGATTCTTTAGACAGTGAAAATTTTCCTGTGACAAGAAATTTCTTTCCTATGGATCAAGAATCTGATAACATCATGGTTATAGAAAATGGAACAACATCTTCTTCTTCAGCTACTTTTCCTCGTGCTCATTGGGTTGGTGTGAAATTTTGTCAATCAGAAACACTTGGAAATGGAAAATCATTAGAAGTTTCATCTTCTTCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCTCAATATAGAGGTGTTACTTTTTACAGAAGAACTGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTTGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGATGCTGACATAAATTTTAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTGACAAAGGAAGAGTTTGTACACGTACTTAGGAGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTTTTAGGAAAAAAGTATGTTTATCTGGGTTTGTTTGACACTGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATTAAATGCAATGGAAAAGAGGCTGTCACAAATTTTGATCCTAGCATCTATGATAGCGAGCTTAATTCTGCAGAACCAGCCATTAACGTTGGTGGTGATCACAATTTGGATTTAAGTTTGGGAAACTCAACTTCAAAATCCATGAATAATGCTCAAACATATGGGAATCACATTTCAAATGTTGCAAATCATGCATCTGATCAATCTAATTGGCACAATGGTGGAAACATAAACAAGCCTAAGCTTGTGAATATTCTACCAAAACCATATAATAGACCAAACAACATGGAAGCATATGGAAGAGATTTGCATGGAGAGAATGAAGCTTTAAGGATGCTAAGTCAAACTCATCTTCATTCTTCATCCTCTAATGAAATGCTTAGATATGGTCCTTTTAGAGATCACTCACAAATGCTTCATAGTTTCCCACATACTCACCCACCAACAAATTTTCATTATCCCAGCAGCAGTTATGGAGGCCGAGTTGGAAGCGATCTTTCATTATCAACAAGCAATCAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGTTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCCTCTTCTTCTCAAGCTTGGCTGCACAAAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1590 0.3723 MWDLNGSPFKRKEEESERCSKTSIEGDDEKGKRVGGSISNSSSSAIVIEEDSEEDQQEQEHKNRTMLMKKRNSKIFGFSVTQDEEQEEEEEEDSLDSENFPVTRNFFPMDQESDNIMVIENGTTSSSSATFPRAHWVGVKFCQSETLGNGKSLEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSAEPAINVGGDHNLDLSLGNSTSKSMNNAQTYGNHISNVANHASDQSNWHNGGNINKPKLVNILPKPYNRPNNMEAYGRDLHGENEALRMLSQTHLHSSSSNEMLRYGPFRDHSQMLHSFPHTHPPTNFHYPSSSYGGRVGSDLSLSTSNQQQWQSGPHYLATVAAASSGFPPQIRPSSSQAWLHKNGFHTLMRPS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4016 529 MobiDBLite consensus disorder prediction 1 72 - -
Tpr4g4016 529 CDD AP2 266 326 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 SUPERFAMILY DNA-binding domain 174 232 IPR016177 GO:0003677
Tpr4g4016 529 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 527 - -
Tpr4g4016 529 SMART rav1_2 175 237 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 SMART rav1_2 267 330 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 ProSiteProfiles AP2/ERF domain profile. 175 231 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 SUPERFAMILY DNA-binding domain 266 326 IPR016177 GO:0003677
Tpr4g4016 529 MobiDBLite consensus disorder prediction 152 176 - -
Tpr4g4016 529 ProSiteProfiles AP2/ERF domain profile. 267 324 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 MobiDBLite consensus disorder prediction 80 99 - -
Tpr4g4016 529 CDD AP2 175 232 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 Pfam AP2 domain 175 223 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 527 - -
Tpr4g4016 529 Gene3D AP2/ERF domain 266 325 IPR036955 GO:0003700|GO:0006355
Tpr4g4016 529 Gene3D AP2/ERF domain 174 233 IPR036955 GO:0003700|GO:0006355
Tpr4g4016 529 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Tpr4g4016 529 MobiDBLite consensus disorder prediction 82 96 - -
Tpr4g4016 529 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4016 Tpr-Chr4 46757005 46761219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4016 1 356 AP2-EREBP Transcription Factor Family AT4G36920 63.488 7.39e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr4g4016 AP2 9.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4016 K09284 - gmx:100792442 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4016 4 46757005 46761219 Tpr4g4016 4 46757005 46761219 ECH
Tpr2g0824 2 10147417 10151021 Tpr4g4016 4 46757005 46761219 PCT