Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4008 ATGAGCATTAGAAGGAAGAGCAACAATGAGAGTGTTGCAAAGCGTGACATTACTATTGCTGATGAAAGCAAGAAGACAGTTATTGTGTCTTTGTGGGGTGATCTTGCAACTAACACAGGACAAGAGTTACTTGACATTGCTGATAAATCCCCAGTAGTTGCAATCAAATCCCTCAAAGTTGGGGACTTTCAAGGTGTTTCATTGTCAGCTATAAGCAAAAGTTTAGTTCTGATAGGAAGACATTTGTATACTTAG 255 0.3882 MSIRRKSNNESVAKRDITIADESKKTVIVSLWGDLATNTGQELLDIADKSPVVAIKSLKVGDFQGVSLSAISKSLVLIGRHLYT* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4008 84 Pfam Replication protein A OB domain 2 76 IPR031657 -
Tpr4g4008 84 Gene3D - 1 82 IPR012340 -
Tpr4g4008 84 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 1 78 - -
Tpr4g4008 84 CDD RPA1_DBD_B 1 78 - -
Tpr4g4008 84 SUPERFAMILY Nucleic acid-binding proteins 2 79 IPR012340 -
Tpr4g4008 84 PANTHER REPLICATION FACTOR A 1, RFA1 1 78 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4008 Tpr-Chr4 46643539 46646005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4008 1 79 Core DNA Replication Machinery Family AT5G61000 74.684 1.49e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4008 K07466 - mnt:21390529 131.339