Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3998 ATGTCTCAAACCAAACATCATCAACAACAACAATCTCCTTCTTTTCTCGATGCTCTTCTCTGTGAAGAGCAAAACACATTCGAAGATGATGATTCCGATGCAAACGTTACTGATTCTGAAACATGTATCCAAAACCCATCAACAAAGTTTCAATCTTTACCTATTGTTTTACTTGAAAATGATCTTTTCTGGGAACACGATGAACTTGTTTCGTTAATTTTCAAAGAAAAAGAGACCCATTTGTTTTCTGTTAATGCTATTGTTGATGGATCTTTGAAAGATTCTCGTTTTGAAGCTGTTAATTGGGTTTCTAAAGTTTGTTCTCATTATGGATTTTCTACTTTGACTACTGTTCTTGCTGTTAACTACTTTGATAGATTTGTTACTAGTTTGTTGTTTCAAAAAGATAAACCTTGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCTGCTAAAATGGAAGAAACCCATGTGCCACTTCTTTTAGACCTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTGTTGTCTACTTTGAAATGGAGGATGCATCCAGTGACACCAATTTCTTTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAGGGTTCTTCTTCATGTCATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGATCAACTTATGAGTTTACTAAAGATTAATGAGGAACAAGTGAATGAGTGCTACAAACTTATGCTGAAGCTATTAGTTTGCAATGATGGCATTTACAGTCTTCACCAGAAACGGAAGCGTGTTTCCGAACCAAGTAGCCCGGGCGGTGTGATTGATGCATCTTTCAGTTGTGATAGCTCAAATAATTCATGGACAGTGGCATCTTCAGGTTCACTTTCAATTCAGCCGATGTTTAAGAGGAGCAGAGCTCAGGACCAGCAGATGCGATTGCCTTCTGTTAATCGCGTGTCTATTGATGTTCTTAATAGCCCTCGTTAA 1122 0.3752 MSQTKHHQQQQSPSFLDALLCEEQNTFEDDDSDANVTDSETCIQNPSTKFQSLPIVLLENDLFWEHDELVSLIFKEKETHLFSVNAIVDGSLKDSRFEAVNWVSKVCSHYGFSTLTTVLAVNYFDRFVTSLLFQKDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCERVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLMSLLKINEEQVNECYKLMLKLLVCNDGIYSLHQKRKRVSEPSSPGGVIDASFSCDSSNNSWTVASSGSLSIQPMFKRSRAQDQQMRLPSVNRVSIDVLNSPR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3998 373 PANTHER CYCLINS 5 356 IPR039361 -
Tpr4g3998 373 Gene3D - 197 287 - -
Tpr4g3998 373 PANTHER CYCLIN-D3-2 5 356 - -
Tpr4g3998 373 SUPERFAMILY Cyclin-like 64 196 IPR036915 -
Tpr4g3998 373 Pfam Cyclin, N-terminal domain 94 195 IPR006671 -
Tpr4g3998 373 Gene3D - 93 196 - -
Tpr4g3998 373 SMART cyclin_7 101 189 IPR013763 -
Tpr4g3998 373 SUPERFAMILY Cyclin-like 199 301 IPR036915 -
Tpr4g3998 373 Pfam Cyclin, C-terminal domain 198 297 IPR004367 -
Tpr4g3998 373 SMART Cyclin_C_2 198 327 IPR004367 -
Tpr4g3998 373 CDD CYCLIN 95 188 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3998 Tpr-Chr4 46517993 46519929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3998 1 363 Core Cell Cycle Gene Families AT5G67260 51.206 7.61e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3998 K14505 - gmx:100785030 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3998 4 46517993 46519929 Tpr4g3998 4 46517993 46519929 ECH