Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3994 ATGAACAACAACAATAATAACAACCATAACCGAAAAGACATGGATCGTATAAAAGGTCCATGGAGCCCCGAAGAAGACGAAGCTTTACAGAAACTCGTTGAACGTCACGGTCCTCGTAACTGGTCACTCATCAGCCGTGCTATTCCCGGCCGTTCTGGAAAATCGTGTAGACTCCGTTGGTGTAATCAACTTTCTCCTCAAGTTGAGCATCGGGCTTTTACACCTGAAGAAGATAATTTAATTATCAGAGCCCATGCTCAGTTTGGTAATAAATGGGCCACAATAGCCCGATTACTTTCCGGCCGAACAGATAACGCTATCAAAAACCATTGGAATTCAACTTTGAAGCGTAAGTGTTCTTCCTTTATGAATTCTGATGATCCAGCTTTTGATCCTCAACCGCTTAAACGTTCTGCTAGCGTCGGTGCTCCCGGGAGTCCATCGGGATCCGATTTAAGTGATTCAGGTGTTCAAACTGTTTTTCGTCCTGTTCCGATTCGTTTACCTGTGGAGAGAATTACTACATCGGAAGTGGCGGTGGCGGTGGCGGAGGAAGAGGAGGATGACGGTGGTCCGTTAACTTCGCTTTCGCTTTCTCTTCCAGGTGTGGAGAGTTCTGATCGATCTGCGGCGGTGGCGATAAGTGTGAATCCGATAACGGCTGTAACGGCTTCGGTTGCGGCGAAAGTCGGAGCGTTGAATTTGAGTGGGGAGTTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTACATGGAAGAGCGTAATAATGGAATGTGTTTTCAAGGGGTTGATAGGCTTAGAAATGTTTCTGCTAAGCCAATTGGGATTAACCGGGTTGATTCTTAA 858 0.4592 MNNNNNNNHNRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDNLIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFMNSDDPAFDPQPLKRSASVGAPGSPSGSDLSDSGVQTVFRPVPIRLPVERITTSEVAVAVAEEEEDDGGPLTSLSLSLPGVESSDRSAAVAISVNPITAVTASVAAKVGALNLSGEFMAVMQEMIKNEVRSYMEERNNGMCFQGVDRLRNVSAKPIGINRVDS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3994 285 MobiDBLite consensus disorder prediction 134 156 - -
Tpr4g3994 285 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Tpr4g3994 285 PANTHER MYB TRANSCRIPTION FACTOR 11 257 - -
Tpr4g3994 285 CDD SANT 72 115 IPR001005 -
Tpr4g3994 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Tpr4g3994 285 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tpr4g3994 285 PANTHER MYB PROTEIN-RELATED 11 257 - -
Tpr4g3994 285 Gene3D - 17 69 - -
Tpr4g3994 285 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g3994 285 Gene3D - 71 137 - -
Tpr4g3994 285 SMART sant 17 66 IPR001005 -
Tpr4g3994 285 SMART sant 69 117 IPR001005 -
Tpr4g3994 285 Pfam Myb-like DNA-binding domain 21 79 - -
Tpr4g3994 285 CDD SANT 20 62 IPR001005 -
Tpr4g3994 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Tpr4g3994 285 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3994 Tpr-Chr4 46423330 46424518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3994 7 261 MYB Transcription Factor Family AT4G37260 52.740 2.65e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3994 Myb_DNA-bind_6 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3994 K09422 - gmx:100806145 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5730 2 66520977 66522683 Tpr4g3994 4 46423330 46424518 ECH
Tpr4g3994 4 46423330 46424518 Tpr4g3994 4 46423330 46424518 ECH
Tpr4g3994 4 46423330 46424518 Tpr2g5730 2 66520977 66522683 PCT