Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3993 ATGGAAGCAATTTCATACTCAATCCCTTCTACCAAATTCCGTTCACTTCATATCCACACCAAAACCACCAGAATTCAATCCTCCGATCTCACTTTTCTTCGTCCTCGTCCCTCCCCAATCTCAATCAAACCTTTCTATTCTTCCAAATTCCTAATTCTCCATCACCATAAGCTTCGTTGCAACGCCGAATCCACAACCAACCACCACCACCACCACGATCATAATCATAATCACAATCACAACGATCATAACCACAATCATAACCACGACCATAACCATAACCATAATCACAATCATAATCATCATCATCATCATCATCATCATAATCATTCACACGAAATCGATGAGGCTAATCTCACTGGACCTCAAAGAGCGATTATCAGTTTCGCTAAAGCTACCAAATGGATTGACCTAGCGAATATCCTGAGAGAGCATTTGTATCTTTGTTGCTTCTCAACTGCTTTATTTGTTTCCGCTGCTATTTGCCCTCATATTTTGCCCAAATCACTCATCAAACCCGTCCAAAATTCTCTCATTCTCGCCGCGTTTCCTTTGGTTGGGATTTCGGCATCACTTGATGCTTTAATTGAAATTAGTAGTGGAAAAGTGAACATCCATGTGTTGATGGCAATGGCAGCTTTTGCATCAATATTTATGGGAAATTCTTTGGAAGGAGGGTTACTTCTTGCAATGTTTAATCTTGCACATATAGCTGAAGAGTATTTCACTAGCCGTTCAATGGTTGATGTTAAAGAGTTGAAAGAGAACAATCCAGAATTTGCACTTGTTCTTGATACAAAAGATGATAAACTTCCTAATACATTTGATTTGGCATACAAGAGGGTTCCTGTGCATGATATAATTGTAGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCGGTGCCACCATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCTAAAGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAACTTAGATGGGAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACTCTAAGCAAAATTGTGCAGTTGACGGAAGAAGCTCAGTTGAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAAAATTACAGCAAAGTTGTAATGGTGTTATCAATTGCTATTGCTGTTCTTGGACCACTTGTATTTAAGTGGCCATTCATTAGTACACCAGCTTGCAGAGGTTCTATTTACAGAGCTTTAGGGCTCATGGTTGCAGCATCACCATGTGCGTTGGCTGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCGAAAAAGGGCATACTACTCAAAGGTGGACATGTTCTGGATGCGCTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACCGGTGGACTTTTATTCAAGGCAATTGAGCCCATTTATGGTCATGACATCAGAAATAGGGAATCAATCATTTCTTCCTGCTGCATTCCTACATGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCTGTTGAAAATTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGAAGGTGCTAAACTATTGAAAGCATCACTTGGATCTATAGATTTCATCACTTCATTTTGTCAATCTGAAAATGAATCAAAAAAGATCAAGGAAGCTATTAATGCGTCTTCTTATGGAAGTGAATTTGTTCATGCTGCCCTTTCAATAAATAAAAAGGTAACATTGATTCATCTGGAGGATAGGCCTCGGCCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGCGTGATGATGTTAACTGGTGATCATGAATACAGTGCAAAGAGAGTTGCAACTGCTGTGGGCATCAATGAGTTTTATTGCAACCTGAAGCCTGAAGATAAGCTGAGCCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTCGGGGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCACCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAATCTCGCCAGACAACTTCACTGATTAAGCAAAACGTTGCTCTGGCATTGTCTAGCATATTTGTGGCTTCCCTTCCGTCAGTTTTGGGATTTCTGCCATTGTGGATAACAGTTCTCTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATACGTGGATTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTTGCAAGGCTAAATCTAGGCTCCCCTCTCTTAGGACAAATATAACTGGTTCAAGCAGCATTACAACTGCGAATTTGTGA 2538 0.4161 MEAISYSIPSTKFRSLHIHTKTTRIQSSDLTFLRPRPSPISIKPFYSSKFLILHHHKLRCNAESTTNHHHHHDHNHNHNHNDHNHNHNHDHNHNHNHNHNHHHHHHHHNHSHEIDEANLTGPQRAIISFAKATKWIDLANILREHLYLCCFSTALFVSAAICPHILPKSLIKPVQNSLILAAFPLVGISASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVKELKENNPEFALVLDTKDDKLPNTFDLAYKRVPVHDIIVGSYVLVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQLNKPKLQRWLDEFGENYSKVVMVLSIAIAVLGPLVFKWPFISTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHDIRNRESIISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGTEGAKLLKASLGSIDFITSFCQSENESKKIKEAINASSYGSEFVHAALSINKKVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSAKRVATAVGINEFYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFVASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRGLNEPSWSWKHDILQLICKAKSRLPSLRTNITGSSSITTANL* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3993 845 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 231 492 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g3993 845 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 601 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr4g3993 845 Gene3D - 482 632 IPR023299 GO:0000166
Tpr4g3993 845 SFLD p-type atpase 453 754 IPR044492 -
Tpr4g3993 845 SUPERFAMILY Calcium ATPase, transduction domain A 279 364 IPR008250 -
Tpr4g3993 845 PRINTS P-type cation-transporting ATPase superfamily signature 115 129 - -
Tpr4g3993 845 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Tpr4g3993 845 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Tpr4g3993 845 PRINTS P-type cation-transporting ATPase superfamily signature 701 720 - -
Tpr4g3993 845 PRINTS P-type cation-transporting ATPase superfamily signature 725 737 - -
Tpr4g3993 845 Gene3D - 243 369 - -
Tpr4g3993 845 Pfam haloacid dehalogenase-like hydrolase 469 714 - -
Tpr4g3993 845 Pfam E1-E2 ATPase 279 451 - -
Tpr4g3993 845 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 92 831 - -
Tpr4g3993 845 CDD P-type_ATPase_HM 155 803 - -
Tpr4g3993 845 SUPERFAMILY HAD-like 469 801 IPR036412 -
Tpr4g3993 845 ProSitePatterns E1-E2 ATPases phosphorylation site. 473 479 IPR018303 -
Tpr4g3993 845 SFLD Haloacid Dehalogenase 453 754 - -
Tpr4g3993 845 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 205 803 IPR027256 GO:0006812|GO:0016021|GO:0019829
Tpr4g3993 845 Gene3D - 464 752 IPR023214 -
Tpr4g3993 845 SUPERFAMILY Calcium ATPase, transmembrane domain M 207 786 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3993 Tpr-Chr4 46410220 46419667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3993 122 829 Primary Pumps ATPases AT4G37270 76.554 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3993 K01534 - gmx:100776309 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3993 4 46410220 46419667 Tpr4g3993 4 46410220 46419667 ECH