Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3989 ATGGTTGCTGCTGGGGCATGGTTGGATGATAACACCAAACAATTGGAAGCAACTATTCACTATCGGAAGCTTGTTTCGATTGACAACCCTAAAATTGGTGAAGTTATTAAATCTGGTGTTGTTCCTCGTTTGGTTGAATTTCTACTTAGGGACGATTTCCCTCAACTTCAGTTGGAGGCTGCTTGGGTACTCACAAACATAGCAGCAGGACCTACTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTGCCGATATTTGTCAAGCTACTTAGTTCAACTGATGATGATGTTCGGGAACAGGCTGTATGGGCATTGAGTAACGTTGCCGGTGATTCCCCTAGCTGCCGTGATCTTGTTCTCAGTCTTGGTGCCCTGATTCCGCTGTTGTCCCAGTTCAATGATCAAGCAACGTCTTCTATGCTGAGAATTGCCACGTGGACCCTGTCAAACTTTTGCAGGGGCAAGCCACAACCCCCATTTGAGCTGGTGAGGCCAGCACTTCCTGCTCTCGCGCGTTTGGTTTTTTCCGATGATATAGAAGTTTTGAAATATACATGTTGGACACTATCATATCTTTCTCATGGAACAAATGACAAAATCCAAGCCGTGATTGAGGCCGGTGTATGTGGCAGACTGGTGGAGCTCCTTCGGCACCCAGCTCATTCAGTAGTGATTCCAGCACTTAGCGCGGTGGGAGAAATTGCAACCGGAAACACCTTCCAGACTCAGGTTGTTATCAATCATCGTCCACTCCCATCCCTTTTGAGGCTGTTGACCCATGATGACAATAACACTATTAAGAAAAGTGCTTGTTGGACTATATCAAACATTGTAGTTGGAAACAAAGAGCACATACAGACTGTTATTGATGCTGGTCTGATTACTCCCATGGTCAATCTTTATAAAAATGCGGAGTCTGACACTAAAAAAGAAATTGCATGGGCACTTTCTAATGCTGCATCTAGCGCTACCAATAAGCAAATCATGTACTTGGGGAGCTTGGATTACATTAAGCCTTTGTGTGATTTTCTTGTTGGCCCTGATCCAACACTTGTTACTGCCTGTTTAGAAGGTCTTGAGAATTTTCTAAGGGTTGGAGAAGCGGAGAAAAGCTCAGGTAATAACACGAGATATGCCAACTTGTATGCTAAGATGATAGATGAGGTGGGGGTATTGGAAAAGATCAAGAACTTGCAGAGTCATGATGACAAAAAAATTTCTGAGAAGGCTGTTGAAATCGCCAAAAGCTTTGGAGGCAATGACATTCCAGTCCCATCCGATGGAATCAACGACGGTTGA 1302 0.4432 MVAAGAWLDDNTKQLEATIHYRKLVSIDNPKIGEVIKSGVVPRLVEFLLRDDFPQLQLEAAWVLTNIAAGPTENTKVVIDHGAVPIFVKLLSSTDDDVREQAVWALSNVAGDSPSCRDLVLSLGALIPLLSQFNDQATSSMLRIATWTLSNFCRGKPQPPFELVRPALPALARLVFSDDIEVLKYTCWTLSYLSHGTNDKIQAVIEAGVCGRLVELLRHPAHSVVIPALSAVGEIATGNTFQTQVVINHRPLPSLLRLLTHDDNNTIKKSACWTISNIVVGNKEHIQTVIDAGLITPMVNLYKNAESDTKKEIAWALSNAASSATNKQIMYLGSLDYIKPLCDFLVGPDPTLVTACLEGLENFLRVGEAEKSSGNNTRYANLYAKMIDEVGVLEKIKNLQSHDDKKISEKAVEIAKSFGGNDIPVPSDGINDG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3989 433 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 293 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Atypical Arm repeat 381 421 IPR032413 -
Tpr4g3989 433 SUPERFAMILY ARM repeat 10 414 IPR016024 -
Tpr4g3989 433 PANTHER IMPORTIN ALPHA 3 417 - -
Tpr4g3989 433 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 124 IPR000225 GO:0005515
Tpr4g3989 433 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 82 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 29 69 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 198 236 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 282 321 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 163 194 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 113 154 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 242 279 IPR000225 GO:0005515
Tpr4g3989 433 Pfam Armadillo/beta-catenin-like repeat 72 110 IPR000225 GO:0005515
Tpr4g3989 433 Gene3D - 2 418 IPR011989 -
Tpr4g3989 433 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Tpr4g3989 433 PANTHER IMPORTIN SUBUNIT ALPHA 3 417 - -
Tpr4g3989 433 SMART arm_5 28 69 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 325 365 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 156 195 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 282 322 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 113 154 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 71 111 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 197 237 IPR000225 GO:0005515
Tpr4g3989 433 SMART arm_5 239 280 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3989 Tpr-Chr4 46368733 46374346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3989 54 328 U-box Gene Family AT3G46510 24.275 8.83e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3989 K15042 - gmx:100808498 576.63