LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g3980	ATGCATCCAAACCCACAAGAACAATCACTACCACTATTAGTGCAACACCAAGAAGATGAAAAGCCACAAGAAACAGCTTATGATTCATCTGAAAAGATAGTAGTAATTGGAATTGACGAATCAACAAATTGGGGTACATCAGTTCCACCATTTTCATGGAAGAAACTATGGAGATTCACAGGTCCAGGTTTTCTAATGAGCATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAGACCTTCAAGCTGGTGCAATTGCTGGGTATTCTTTGTTATGGCTTCTTATGTGGGCTACAGCAATGGGGCTTTTGATTCAGCTTTTGGCAGCTAGGTTAGGTGTTGCTACAGGGAAGCATTTGGCTGAGCTTTGTAGGGAGGAGTACCCTAGATGGGCTAGTAATCTGCTTTGGGTTATGGCTGAGTTTGCTTTGATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGGTTGTTCCTCTTTGGGGTGGTGTTATCATTACTGCTCTTGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGATCATTGGAGGCTTTTTTTGCTGTTCTCATTGGCATAATGGCAGTAGCTTTTGGTTGGATGTTTAGCGAGGCAAAGCCAAGTGGCAAGGAACTTCTAGTTGGCATTTTTGTTCCAAAACTCAGCTCAAGAACTATACAACAAGCTGTTGGAGTTGTGGGCTGTCTTATAATGCCTCACAATGTATTCTTGCATTCCGCTCTTGTTCAATCAAGGAAAGTTGATCAAAGCAATCAAGGCCGAGTTCAAGAAGCGCTTAATTACTTCTCAATAGAGTCCACACTTGCCTTGATAGTCTCCTTTATTATCAACATATTTGTCACAGCTGTGTTTGCGAAAGGGTTTTATGGTAAAGAAACGGCGAATAGTATTGGCCTTGTAAATGCGGGACAATATCTCCAAGATACTTATGGAGGTGGAATGTTTCCGATATTGTATATATGGGGTATTGGATTGTTAGCAGCTGGTCAAAGTAGCACTATAACCGGTACTTACGCCGGCCAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTGAAGAAATGGATGAGAGCGTTGATTACTCGAAGTTTTGCAATAGTCCCAACTATGATAGTTGCTCTTATATTTGATGCTACCGAGGATTCACTCGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCGGTACAAATCCCCTTTGCACTTATTCCTTTGCTTTGTTTGGTATCAAAGGAACAGATAATGGGAACTTTCAAAATTGGCACTGTCCTCAAGATTACTTCTTGGTGTGTGGCTGCTCTTGTGACAGTGATCAATGGCTATCTTTTGATGGAATTCTTTTCAGCTGAAGTGAATGGAATATTAGTTGGAGCTATAGTATGTGTAGTAACTGCTGCATATGTTGCATTCATAATATATCTTATTTTGAGGGCCACTAGGAAGTAA	1497	0.4015	MHPNPQEQSLPLLVQHQEDEKPQETAYDSSEKIVVIGIDESTNWGTSVPPFSWKKLWRFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLAARLGVATGKHLAELCREEYPRWASNLLWVMAEFALIGSDIQEVIGSAIAIRILSNGVVPLWGGVIITALDCFIFLFLENYGVRSLEAFFAVLIGIMAVAFGWMFSEAKPSGKELLVGIFVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRKVDQSNQGRVQEALNYFSIESTLALIVSFIINIFVTAVFAKGFYGKETANSIGLVNAGQYLQDTYGGGMFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIVPTMIVALIFDATEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGTVLKITSWCVAALVTVINGYLLMEFFSAEVNGILVGAIVCVVTAAYVAFIIYLILRATRK*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g3980	498	Pfam	Natural resistance-associated macrophage protein	77	438	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	17	495	-	-
	Tpr4g3980	498	Hamap	Divalent metal cation transporter MntH [mntH].	41	464	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	54	432	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	17	495	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	135	161	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	165	184	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	190	211	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	239	262	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	346	365	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	374	391	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Tpr4g3980	498	PRINTS	Natural resistance-associated macrophage protein signature	408	427	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g3980	Tpr-Chr4	46244777	46247900	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g3980	20	492	Inorganic Solute Cotransporters	AT1G47240	74.316	0.0	738

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g3980	K21398		-	gmx:100812381	828.165

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g3980	4	46244777	46247900	Tpr4g3980	4	46244777	46247900	ECH
	Tpr2g5717	2	66345742	66349250	Tpr4g3980	4	46244777	46247900	PCT