Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3967 ATGCGCACGAATCTCCAGCAAGCACCACTCTTCCGCTTGTTACTAGTGTGCACCCTCATTACCTTACGTGCGCCGGTTGCGCAGCCCCCTAACCTGCGCACACCCACCCAATCCATCGAATCTAATACCACCACCACTATCGTTTATCACCACCACCACAATTCTCAGATCTCAATTTTCAATCTCAATTCAATGTCCAAAGCTCGCGTTTACACCGATGTCAATGTTATTCGTCCCAAAGAATATTGGGATTATGAATCTCTCACCGTTCAATGGGGGGATCAAGATGATTATGAGGTTGTACGAAAAGTGGGAAGGGGGAAATATAGTGAGGTGTTTGAAGGGATAAATGTTAACAGCAATGAACGCTGTGTTATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGGGATCAGCACTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAACCACACAATGTTATGATTGATCATGAGTTGCGAAAACTTCGCTTGATTGATTGGGGTCTTGCTGAGTTTTATCATCCTGGAAAGGAATATAATGTCCGTGTGGCTTCAAGATACTTTAAGGGCCCCGAACTTCTGGTTGATTTACAAGACTATGATTACTCATTAGACATGTGGAGCCTTGGTTGCATGTTTGCCGGAATGATATTTCGCAAGGAACCATTCTTTTACGGTCATGACAACCACGACCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTTGAGCTAGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTCATCAATCCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGACCACCAAGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCGTATTTCTCTCAAGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACTCAGTAA 1194 0.4171 MRTNLQQAPLFRLLLVCTLITLRAPVAQPPNLRTPTQSIESNTTTTIVYHHHHNSQISIFNLNSMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3967 397 SMART serkin_6 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3967 397 Pfam Protein kinase domain 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3967 397 CDD STKc_CK2_alpha 79 383 IPR045216 GO:0004674|GO:0006468
Tpr4g3967 397 SUPERFAMILY Protein kinase-like (PK-like) 69 387 IPR011009 -
Tpr4g3967 397 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Tpr4g3967 397 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 7 397 - -
Tpr4g3967 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Tpr4g3967 397 Gene3D Phosphorylase Kinase; domain 1 151 174 - -
Tpr4g3967 397 Gene3D Phosphorylase Kinase; domain 1 89 147 - -
Tpr4g3967 397 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3967 397 Gene3D Transferase(Phosphotransferase) domain 1 175 384 - -
Tpr4g3967 397 PANTHER CASEIN KINASE II SUBUNIT ALPHA 7 397 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3967 Tpr-Chr4 46126141 46132167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3967 96 383 Core Cell Cycle Gene Families AT1G76540 29.450 1.70e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Tpr4g3967 Pkinase 4.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3967 K03097 - gmx:100819679 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3967 4 46126141 46132167 Tpr4g3967 4 46126141 46132167 ECH