Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3960 ATGACGCAATTTACACCTTCACTACCTTATTTGCACCAAACAACAACAACCTTTTCAAACCCTTCTTCTTCCATGAACAAAAACAATCAAATACCAACTAAACCATGGTTTCCAACATCCAAAGCTTTAACTACTTTTGGTGACACAAACTGCATGGAACAGTTACTTGTTCATTGCGCAAACGCAATCGAAACAAACGATGTAACACTTGCTCAACAAATCCTTTGGGTTCTTAACAATATAGCACCACAAGATGGCGATTCAAATCAACGCTTAGCTTATAGTTTCCTAAGAGCCCTCACAAATCGCGCAGCGAAAACCGGTACCTGTAAAATGCTAGTAGAACAAGTTTATTCAAATGCTCATAACAATCTTACCATAGAAACTCATAGATTCTCAGTCATTGAACTAGCTAACTTTGTCGATTTAACACCATGGCATCGATTCGGTTATGCAGCTGCTAATGCAGCTATTCTTGAAGCAACAGAAGGTTTCTCAGTGATACATATTGTTGATTTAAGTTCAACTCATTGCATGCAGATTCCTACATTAATCGATGCTATAGCGAATCGCCATGAAGTTCCTCCTTTAATCAAACTCACAGTTTCTGATCATGATAATAACATTGATCAAATTCCACCTAAACTTGATCTTTCTTATCAAGAATTAGGTTCTAAGTTGGTTAATTTCGCTAGGTCTAGAAACGTGACATTAGAATTCAGAGTAGTTTCTTCGAGTTACACAAACGGTTTTGCTTCTTTGATCGAACATTTAAGTGTTCAACGTATGGTTTATTCAGGTGAAGCTTTGGTTATAAATTGTCACATGATGCTTCATTATATTCCAGATGAAACCCTATCAAATTCAAACTCTTATGTTTATGATTCCATGTCTTCTGTATCTACTACTACCACTACTACTACTACTACTGCTACTACTACGTCTCTGAGATCATTGTTTCTTACCGCGCTTCGAGGTTTAGATCCAACACTTGTTATTTTAGTAGATGAAGATGTTGATTTAACTTCAAATAACTTGGTCAATAGATTAAGGTCAGCATTCAATTATCTATGGATACCTTATGATACTGTGGACACTTTTCTGCCACGTGGAAGTAAACAAAGACAATGGTATGAAGCAGATATTTGTTGGAAGATTGAGAATGTGATAGCTCATGAAGGAGTTCAAAGAGTTGAGAGAGATGAACCTATAGGAAAATGGGAACAAAGAATGAGAAATGCAAATTTTCAAGGGATTGGATTTGGTGAAGAATGTGTTGGTGAAGTGAAAGCTATGCTTGATGAACATGCTGCTGGTTGGGGATTGAAGAAAGAAGATGAATGTATTGTGCTTACCTGGAAAGGGCATAATGTTGTTTTTGCTTCTGCTTGGTTACCTGCTTAA 1404 0.3675 MTQFTPSLPYLHQTTTTFSNPSSSMNKNNQIPTKPWFPTSKALTTFGDTNCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAAKTGTCKMLVEQVYSNAHNNLTIETHRFSVIELANFVDLTPWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEVPPLIKLTVSDHDNNIDQIPPKLDLSYQELGSKLVNFARSRNVTLEFRVVSSSYTNGFASLIEHLSVQRMVYSGEALVINCHMMLHYIPDETLSNSNSYVYDSMSSVSTTTTTTTTTATTTSLRSLFLTALRGLDPTLVILVDEDVDLTSNNLVNRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERDEPIGKWEQRMRNANFQGIGFGEECVGEVKAMLDEHAAGWGLKKEDECIVLTWKGHNVVFASAWLPA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3960 467 ProSiteProfiles GRAS family profile. 43 465 IPR005202 -
Tpr4g3960 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 465 IPR005202 -
Tpr4g3960 467 Pfam GRAS domain family 52 464 IPR005202 -
Tpr4g3960 467 PANTHER SCARECROW-LIKE PROTEIN 32 29 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3960 Tpr-Chr4 46035936 46038598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3960 32 466 GRAS Transcription Factor Family AT3G49950 56.720 7.14e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr4g3960 GRAS 3.3e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3960 - - cam:101509453 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3960 4 46035936 46038598 Tpr4g3960 4 46035936 46038598 ECH