Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3959 ATGAGTTGCAATGGTTGCCGAGTTCTTCGCAAAGGTTGTAGCGAAACATGTATTCTTCGACCTTGTTTACAATGGATCGAAACACCAGAAGCTCAAGGCCACGCTACTGTTTTCGTAGCTAAATTCTTCGGTCGCGCTGGTCTCATGTCTTTCATTTCCAACGTCCCTGAACCACAAAGACCAGCTCTGTTTCAGTCTCTATTATTTGAAGCGTGTGGAAGAACGGTTAACCCTGTGAACGGTGCGGTGGGGCTATTATGGACTGGAAACTGGCACGTGTGTCAGGCAGCGGTTGAGACGGTTCTTCGAGGCGGTGTTCTTCGACCTTTACCGGAGCTGACACTCATGGACGCGCCACCTGTTGCTGCTGATGAAGCATCTGAGGCGGAAGACGGTGGTGTTGACGCCATTTGGAGGATCCGAGATCCGAATCCGAATTTCCGGTTCACAAGCTCACGATCTAATAATAAAGTCTCATCTGGAGTTAAACGCCGACGATCGGAGGAGTTTGTAAAGGTTCCACCGGCGACTAATCTTGATCTTAGGCTTACACCTATTTTCCTGCAGAAAGAGATGGAGAATCGTCTACCGGGTTCTCCGTCGATGAATTCGGAGGAATCCGTGACGACGACGGCGTGTTTGGAGACTGGAATTGCAGATCGATTGGCTCACGGTGGTGAACGGAAAGTTCTCAACCTTTTCATATGA 708 0.4944 MSCNGCRVLRKGCSETCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGVLRPLPELTLMDAPPVAADEASEAEDGGVDAIWRIRDPNPNFRFTSSRSNNKVSSGVKRRRSEEFVKVPPATNLDLRLTPIFLQKEMENRLPGSPSMNSEESVTTTACLETGIADRLAHGGERKVLNLFI* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3959 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tpr4g3959 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 235 - -
Tpr4g3959 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 235 - -
Tpr4g3959 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3959 Tpr-Chr4 46014735 46016215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3959 1 235 AS2 family AT4G37540 57.831 5.20e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g3959 LOB 9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5699 2 66108245 66109712 Tpr4g3959 4 46014735 46016215 ECH
Tpr4g3959 4 46014735 46016215 Tpr4g3959 4 46014735 46016215 ECH
Tpr4g3959 4 46014735 46016215 Tpr2g5699 2 66108245 66109712 PCT