Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3956 ATGGCCATAAGACAATTCCAATTGAACTTCTCGCGCGATAGATTGGTCTTTCTCTTTCGAACATCTCAATCTCATTCCTTCTTTTACTTTTCTAATAATTTTATTTTTAATAATAAAAAATTCCCCAAATCTCTTCTCTCTTTTCCCTCTTCTTTCTTCCTCCGCCGCTTAGTCGCGTCCGCCACCACAACAACTCCACCACCGCCCTACCACCATCGCCGCCGTCCTCGCCTTCCTCCTCCGGTCTTCATGTCTCAGAAGTTTGGAAAAGCCACTCGCCGCCCTGGCGCTACCTCCAAGGCTAGGGTTTATTCTGACATCAACGTTGTTCGCCCTAAGGAATATTGGGACTACGAAACCCTCACCGTTCAGTGGGGGGAGCAGGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGTGTTCATTGTACTGATAATGAAAAATGTGTTATTAAGATTCTCAAACCTGTCAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCTTGACATTGTTAGAGACCAGCAGTCCAAGACCCCTAGTCTCATATTTGAATATGTCAACAACACTGACTTTAAAGTACTCTATCCTACACTGTCAGACTATGATATACGATATTATATCTATGAACTTCTAAAGGCATTGGATTATTGCCATTCACAAGGAATCATGCATCGAGATGTAAAGCCCCATAATGTAATGATTGACCATTCGCAGCGTAAGCTTCGTCTTATAGATTGGGGGCTTGCAGAGTTCTATCACCCTGGGAAAGAATATAATGTCCGTGTGGCTTCAAGATATTTCAAAGGTCCGGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCCGGGATGATATTCCGGAAGGAGCCCTTCTTTTATGGACACGATAACTATGATCAACTGGTCAAGATAGCCAGGGTGCTCGGTACGGATGAATTAAATACATATTTGAATAAGTATCGCATTGAGTTGGACCCGCATTTTGCAGCACTTATTGGGAGGCATAGCCGGAAGCCATGGCAAAGGTTCATTAATGTTGAAAATCAACACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTGCGATACGATCATCAAGAGCGGCCCACTGCAAAAGAAGCAATGGCCCATCCATACTTCAATCCAATTAGAAATGCTGAAAGTAGCCGAGCACGTGCACATTGA 1293 0.4331 MAIRQFQLNFSRDRLVFLFRTSQSHSFFYFSNNFIFNNKKFPKSLLSFPSSFFLRRLVASATTTTPPPPYHHRRRPRLPPPVFMSQKFGKATRRPGATSKARVYSDINVVRPKEYWDYETLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHSQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARVLGTDELNTYLNKYRIELDPHFAALIGRHSRKPWQRFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRNAESSRARAH* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3956 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Tpr4g3956 430 Gene3D Phosphorylase Kinase; domain 1 131 207 - -
Tpr4g3956 430 SMART serkin_6 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3956 430 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Tpr4g3956 430 ProSiteProfiles Protein kinase domain profile. 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3956 430 CDD STKc_CK2_alpha 112 416 IPR045216 GO:0004674|GO:0006468
Tpr4g3956 430 Pfam Protein kinase domain 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3956 430 SUPERFAMILY Protein kinase-like (PK-like) 103 420 IPR011009 -
Tpr4g3956 430 Gene3D Transferase(Phosphotransferase) domain 1 208 416 - -
Tpr4g3956 430 PANTHER CASEIN KINASE II SUBUNIT ALPHA 72 422 IPR045216 GO:0004674|GO:0006468
Tpr4g3956 430 PANTHER BNAA04G13490D PROTEIN 72 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3956 Tpr-Chr4 45965689 45974225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3956 129 419 Core Cell Cycle Gene Families AT3G48750 32.013 4.45e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Tpr4g3956 Pkinase 1.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3956 K03097 - gmx:100776388 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3956 4 45965689 45974225 Tpr4g3956 4 45965689 45974225 ECH