Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3953 ATGGACACATCTTTCCTTTTATGTGATGATGAAGACCACGCATTCCTCTTCATGCAAAACAATGATTACAATGAAAATATTACCATCAACTCATTGAACCAAAATCTCAATTCCAAATATGAAAAGGAATACATTGAGTATTTGTTTACACTTGAAAACAGAAAGTTCCCATCCTTCAGTTATTGCTTCAAGTCCACCATAGGCCATGTTGATTTCAACAACATACTACGTATTAATGCCCTCGACCACATTTTTAAAATACAGGAAAAACTTGGATTCAAGCTCTGTACAGCTTATTTGTCAGTGACATACTTTGATCAGTTTCTTTTGAAGCAACACAAACACATCCATGAAGAGAGGTATGTTCAGCTATTATCTGTGGCATGCTCGTCTCTTGCTGCAAAGATGATGGAAGAGCGTGATCTACCGCTTCTATTTAAATACATAACGGAAACATACGAAGAGCAAGGTTTTGTTGACATGCCGTGTATTGTGGAGATGGAGGTAGAAGTTTTTAGTACATTGGAATGGGAATTGCCAACTGTCACGCCTTTTGATTTTCTGCGTTACTTTGTTTACTTGTTTTGCACTGAATATCCACAAGAACCATTGATCTCACAAGCTGTAGAACATGTTTTGGCTATCTTGAAAGATGTTAATTTGATGGATCATAGACCATCGACTATCGCCTTGGCTGCCACATTGATGGTGGCTTTTGATGCTGCATTAACAAGAGAAATCATGGATCTGCACATAGGTGAAATCTTATTGCAGCTAAATTTAGACAGTGTGAGTTTTATTAGTTCTTTATCTGGTTTTTGTTTCTTGTGTAATCATAAATAA 843 0.3665 MDTSFLLCDDEDHAFLFMQNNDYNENITINSLNQNLNSKYEKEYIEYLFTLENRKFPSFSYCFKSTIGHVDFNNILRINALDHIFKIQEKLGFKLCTAYLSVTYFDQFLLKQHKHIHEERYVQLLSVACSSLAAKMMEERDLPLLFKYITETYEEQGFVDMPCIVEMEVEVFSTLEWELPTVTPFDFLRYFVYLFCTEYPQEPLISQAVEHVLAILKDVNLMDHRPSTIALAATLMVAFDAALTREIMDLHIGEILLQLNLDSVSFISSLSGFCFLCNHK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3953 280 SUPERFAMILY Cyclin-like 35 179 IPR036915 -
Tpr4g3953 280 Gene3D - 58 180 - -
Tpr4g3953 280 Gene3D - 47 243 - -
Tpr4g3953 280 PANTHER CYCLINS 39 246 IPR039361 -
Tpr4g3953 280 CDD CYCLIN 76 171 IPR013763 -
Tpr4g3953 280 Pfam Cyclin, N-terminal domain 45 179 IPR006671 -
Tpr4g3953 280 PANTHER AMINO-TERMINAL DOMAIN CYCLIN 39 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3953 Tpr-Chr4 45895864 45896982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3953 77 251 Core Cell Cycle Gene Families AT1G70210 35.165 2.69e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3953 K18811 - gmx:100808000 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3953 4 45895864 45896982 Tpr4g3953 4 45895864 45896982 ECH
Tpr2g5689 2 65932444 65934805 Tpr4g3953 4 45895864 45896982 ECH