Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3949 ATGGATACATTGTTTAGGCTAGTCAATTTCCACCAACAACCACAATATCAACCTGATCCTTCCCTCAACTCCACCACCACCTTAACAACATCAAGCAGTTCTAGATCCTCAAGACAAACAACACCAACAACAACATATTATTACAATCATCAACTACAACAACAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAATAATAACAATGAAGAAGACTTATCTTCATCTTCTTCTAAACAAAATTACTATAATAATTATTCTTATGATCAAACTCATCATCACCATGTTTCTCCTACTACTATTACTACTACTACAAACACATATACCACCTTTAATACTATTAACACCCCTACAAATACCGAAATTAATTACTCTTACTCACCCTCCCAAGACTACTTCAATAACTTTGATTTCTCCGGTAACAATTCATGGTCACAAAACATCCTCCTTGAAACCGCGCGTGCCATTTCCGACAACAACACTAACCGAATTCAACAACTTATGTGGATGCTAAACGAGCTAAGTTCGCCTTATAGCGACACCGAGCAAAAACTTTCATCTTATTTTCTTCAAGCTTTGTTTAGTCGAATGAACGATGCAGGTGATAGAACTTACAAAACCTTAACATTTGCATCGGAGAAAACATGTTCGTTTGATTCAACTAGGAAGATGTTGTTGAAGTTTCAAGAAGTTAGTCCATGGACAACTTTTGGACATGTAGCATCAAATGGAGCTATTTTAGAAGCATTAGAAGGTAACCCTAAACTTCATATAATTGATATAAGCAACACTTATTGCACTCAGTGGCCAACGCTTCTCGAAGCATTGGCCACTCGCTCTGACGATACACCTCATCTACGTTTAACCACTGTTGTCACCGCAGTCAGCGGTGGCTCAGTTCAAAAAGTCATGAAGGAAATTGGTATAAGGATGGAGAAATTCGCGAGGCTAATGGGTGTGCCATTTAAATTCAAAATCATTTTCAGCGATTTAAGGGAGTTGAATTTAAGTGATTTCGATATCCAAGAAGATGAAGCTTTGGCTATAAATTGTGTTAACTCTTTGCACTCAATATCCGGGGTGGGTAACCACCGCGACAACTTAATATCTTTGCTTCGAGGATTAGAGCCTAGGGTTATGACGGTGGTTGAAGAGGAAGCCGATTTCGAAGTTTGTTTTAGTTCCGATTTCGTGGAAGGTTTCGGAGAGTGTTTAAGGTGGTTTAGGGTTTATTTTGAAGCACTTGAAGAGAGTTTTTCGAGAACAAGTTGCGAAAAGTTAATGCTCGAAAGAGAAGCTGGAAGAAGCATTGTTGATTTGGTTGCTTGTGATGCTTTTGAATCAGTGGAGAGACGTGAAACGGCATCACGGTGGAGGAGGAGGTTGCATGGTGGAGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAGAGAAGGGTGGTCAATGACACAGTGTTCTTCTTCTTCCGATGACGGAATATTCTTGTCGTGGAAGGAAAAGCCGGTGGTGTGGGCCAGTGTGTGGAGGCCATGA 1581 0.3966 MDTLFRLVNFHQQPQYQPDPSLNSTTTLTTSSSSRSSRQTTPTTTYYYNHQLQQQEDEECFNNFYYMDHNNNNNEEDLSSSSSKQNYYNNYSYDQTHHHHVSPTTITTTTNTYTTFNTINTPTNTEINYSYSPSQDYFNNFDFSGNNSWSQNILLETARAISDNNTNRIQQLMWMLNELSSPYSDTEQKLSSYFLQALFSRMNDAGDRTYKTLTFASEKTCSFDSTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAVSGGSVQKVMKEIGIRMEKFARLMGVPFKFKIIFSDLRELNLSDFDIQEDEALAINCVNSLHSISGVGNHRDNLISLLRGLEPRVMTVVEEEADFEVCFSSDFVEGFGECLRWFRVYFEALEESFSRTSCEKLMLEREAGRSIVDLVACDAFESVERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYREGWSMTQCSSSSDDGIFLSWKEKPVVWASVWRP* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3949 526 MobiDBLite consensus disorder prediction 10 41 - -
Tpr4g3949 526 Pfam GRAS domain family 152 525 IPR005202 -
Tpr4g3949 526 ProSiteProfiles GRAS family profile. 141 525 IPR005202 -
Tpr4g3949 526 PANTHER PROTEIN SHORT-ROOT 1 525 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Tpr4g3949 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 525 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3949 Tpr-Chr4 45844612 45846713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3949 1 526 GRAS Transcription Factor Family AT4G37650 55.154 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr4g3949 GRAS 3.3e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3949 - - cam:101506038 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3949 4 45844612 45846713 Tpr4g3949 4 45844612 45846713 ECH
Tpr2g5677 2 65827544 65840292 Tpr4g3949 4 45844612 45846713 PCT