Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3945 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTTGTCAAACACGGGTCAGGAAAATGGCGCACTATACTTTCTGATCCCGAGTTCAGTTCCATTTTGCGTACGCGGTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGTTCCCGGCAGAAGGCGAAGCTTGCCCTTAAAAAGAACCTTGCACTTCCAGCCCCCAAAACTAACAATAACCAATTGGCCGTGAGTAAAGTAGTTCAACGTGAAGACATTCTCGATGTTAAGCCCCTAGCAGCCTCTAGCGGAACATTGCAATCTTCAAATTCAAAAGAACAAGTATCAAGGTTGGGGGATAATCATGTACTAGAGGCTATTGTCAATATGAAAGAGTCAAAGGGTTCTGACAAGGCTGCCATTGCTACTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAACAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAATCCAGGAAAAGCAGAAGTACAAAATTATGGCCAGTTCAACAGTATCTGAGAAAAGTAGAAGCTCTTCCTTGATGCTCGTTGAAGCGAGGCCCAAAGATTCTCCAGAAGTGGATAAGAGTGGTGTGGTCAAGGTGCTTTCAAAATCCCAAATTGATGAAGAGCTAACAAAAATGAAGAGGATGTCAGCTGAAGAGGCGGCCGCTGCAGCTGCAAAAGCAGTTGCGGAGGCAGAACTTGCCATTGCGCAGGCTGAGGAAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCGAGTCTTCGCAAAAGCAACAATGAAGGCGCTCAAATGCAAACTTCGTAATGCTGTGGACTTTTGCTTGTTCATCATCGTCCGAGTTGGCTTGAGATAA 936 0.4541 MGAPKQKWTAEEEAALKAGVVKHGSGKWRTILSDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLALPAPKTNNNQLAVSKVVQREDILDVKPLAASSGTLQSSNSKEQVSRLGDNHVLEAIVNMKESKGSDKAAIATYIEEKYQCPPNLRKLLSTKLQQMVTSGKIIQEKQKYKIMASSTVSEKSRSSSLMLVEARPKDSPEVDKSGVVKVLSKSQIDEELTKMKRMSAEEAAAAAAKAVAEAELAIAQAEEAAREAEAAEAEAEAARVFAKATMKALKCKLRNAVDFCLFIIVRVGLR* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3945 311 SUPERFAMILY "Winged helix" DNA-binding domain 127 197 IPR036390 -
Tpr4g3945 311 Gene3D - 126 201 IPR036388 -
Tpr4g3945 311 Coils Coil 245 282 - -
Tpr4g3945 311 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tpr4g3945 311 PANTHER MYB TRANSCRIPTION FACTOR 1 294 - -
Tpr4g3945 311 SMART sant 4 59 IPR001005 -
Tpr4g3945 311 CDD SANT_TRF 6 57 - -
Tpr4g3945 311 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr4g3945 311 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Tpr4g3945 311 Pfam linker histone H1 and H5 family 129 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr4g3945 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Tpr4g3945 311 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Tpr4g3945 311 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tpr4g3945 311 Gene3D - 2 59 - -
Tpr4g3945 311 SMART h15plus2 106 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3945 Tpr-Chr4 45820018 45826083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3945 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 49.164 5.98e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g3945 Linker_histone 7.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3945 K09422 - gmx:100779583 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5672 2 65758275 65763748 Tpr4g3945 4 45820018 45826083 PCT