Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3930 ATGATTGAGTTGCATTGTTTTGTTTCTAGACATATTTTGTTACATTTTTTTTTTTTTGTGAGAGAAAAAATGAAGAGTATGATGGAAAATGATGATGAGAGTGTTGACATTAACAATGAGAATAATTGGTTAGGTTTTTCACTATCTCCTCAAATGAATAATCAGTCACAACATTCTTCATCTTCTTCTGCTTCTGAAATAGTTCCACTTTCATCAAGCTTTTACAATTCTACCCCTCTTAGTAACTATTGTTTCTCTTATGGACTTGAACATGAAAATAATGTTGGTTTGTATTCTTTACTTCCCATTATGCCCCTCAAATCTGATGGATCTCTTTATGAAATGCCCCCACAAACACAAGGTAATGAAGCTATGGAAACTCCTCATTATGCATGTACTAGTACTACTGTCACAGAAACAATGCCTTTGAGTTTAGACAGTATGTTTCAAAATCAAGTTCAACACATGAACAATCAACAACAATTATCATATTATGATTTAATGTTAGAAGGGTCAAAGCAAAATCAAAATTCAAGTGGAAATTTTCATGTTTCAAACATAGGTGAAGATAATGGACTTAGTGGTTTAAAGAATTGGGTTTTAAGGAATTTTCCAGCTAGTCATGGACATGATAATTCAAAGATGATTGTTCCGGTTGTTGTCGATGAAAATGTCGGTGAATCTTGTTCCAATATTGGTTCAATGGCTTATGGTGATTTGCATTCTTTGAGCTTATCAATGAGTCCTAGTTCACAATCTAGCTGTGTTACAACTTCACAGAATATGTCATCTGCTGTTATTGATAATAATTCTGTTGCTATTGATACTAAGAAAAGAGGAAATGAAAAGATTGAACAGAAACAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACCTCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGTTTATCTTGGTGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTTAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAAAATATGACAAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGACACCACCAACATGGAAGATGGCAAGCTAGAATTGGTAGAGTTGCTGGTAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCGGCCGAAGCCTACGACATAGCAGCTATAAAATTCCGAGGAGCTAATGCAGTAACCAACTTTGATATCGTAAAATATGATGTTGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCATTGAATTTGCTAGAAGGAACAAAGAGGTTGTCGATACAACTCAACACATTGATCAAAACAAGCCTAATTCTTCTGCTTATGACAACAACACTCAAGAAGCAATTTTAATGCAGAAGAATATGGTTCTGTATCAATCCTCTCAACAACAGAATCAACCAAGAATTGAGAATGAAAGAACTCATCAATCATTTTCATCGGTATCTTTCGATAACATGTTTCATCAAGAAGTAGTTGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTAAGCAGTTCAAGGGAAGGTAGTCCTGATAGAACAAGCTTACAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCTAAACTATTGGTTACTAATGCTCCAAATAGTAATGTGAATTCATGGGACCCTTCACTTCATCTTAGGACTCAGATGCCAGTTTTTGCTGCTTGGACTGATGCATAG 1917 0.3542 MIELHCFVSRHILLHFFFFVREKMKSMMENDDESVDINNENNWLGFSLSPQMNNQSQHSSSSSASEIVPLSSSFYNSTPLSNYCFSYGLEHENNVGLYSLLPIMPLKSDGSLYEMPPQTQGNEAMETPHYACTSTTVTETMPLSLDSMFQNQVQHMNNQQQLSYYDLMLEGSKQNQNSSGNFHVSNIGEDNGLSGLKNWVLRNFPASHGHDNSKMIVPVVVDENVGESCSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVIDNNSVAIDTKKRGNEKIEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIVKYDVEKIMASSNLLSIEFARRNKEVVDTTQHIDQNKPNSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIENERTHQSFSSVSFDNMFHQEVVEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGIMPSTASKLLVTNAPNSNVNSWDPSLHLRTQMPVFAAWTDA* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3930 638 Pfam AP2 domain 304 362 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 Pfam AP2 domain 407 456 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 SUPERFAMILY DNA-binding domain 303 372 IPR016177 GO:0003677
Tpr4g3930 638 CDD AP2 405 466 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 SMART rav1_2 304 376 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 SMART rav1_2 406 470 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 ProSiteProfiles AP2/ERF domain profile. 304 370 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 39 176 - -
Tpr4g3930 638 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 168 636 - -
Tpr4g3930 638 ProSiteProfiles AP2/ERF domain profile. 406 464 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 SUPERFAMILY DNA-binding domain 405 464 IPR016177 GO:0003677
Tpr4g3930 638 CDD AP2 303 370 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 168 636 - -
Tpr4g3930 638 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 176 - -
Tpr4g3930 638 PRINTS Ethylene responsive element binding protein signature 305 316 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 PRINTS Ethylene responsive element binding protein signature 446 466 IPR001471 GO:0003700|GO:0006355
Tpr4g3930 638 Gene3D AP2/ERF domain 406 466 IPR036955 GO:0003700|GO:0006355
Tpr4g3930 638 Gene3D AP2/ERF domain 303 372 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3930 Tpr-Chr4 45634777 45638449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3930 24 505 AP2-EREBP Transcription Factor Family AT4G37750 50.281 6.01e-149 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tpr4g3930 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3930 K09285 - gmx:100792451 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5658 2 65586728 65590690 Tpr4g3930 4 45634777 45638449 PCT