Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3927 ATGGGGAGGGCTCCTTGTTGTGACAAAGCCAATGTGAAGAGAGGTCCATGGTCACCTGAAGAAGACTCCAAACTCAAATCTTATATCCAACAATATGGCACTGGTGGCAACTGGATAGCCCTGCCAAGCAAAATAGTAGGCCTCAAAAGGTGTGGAAAAAGTTGTCGTCTTAGATGGCTAAATTATCTTCGTCCAAACCTTAAACATGGAAGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTCTATGTCAATATCGGAAGCAGGTGGTCCGTTATAGCAGCACAATTACCAGGACGAACGGATAATGATATAAAGAACTACTGGAACACAAAGTTGAAGAAGAAACTTCTAACAAAGCAAAAGAAGGATCAACAATCTCAAACTCGCCGAGCTTTTAGACTAAACCAAGAGATTAAGAGAGAAAATGGAAATTTGGTATTGCCTAATGAAGTTATCAATATTAGCCAAACTCCAAATTATTTGCAAACAGAACACTATTCCTTTCCAAATCCTTCTTTCATCCAAAATTATAATCTCAAGGAAATTGAATTCTCTGATAATCATCAACTGCAGGGAATTAATTCTCAATATCCATGTGACATTTACTTCCAACAAGACCAACTAAGTTATGATCCATCTACAATCAACAACATAAACTCTGCAGGTTTGGCCTATGTGAACCACCAACAAACAGATGGATCAATGAAGATCGATAGTGGCGCGAACTCGACATTTATAGAAAGCAGTAATTGGGGAGATATAAGTTCTTTGGTTTCTGATTATGAAGGTTGCCATCAACAAACAATGATTCAAGAAGATGTTACTTTTGATGAGTCTATGTTGTTCTATGGAATGGTCCAAACACAATAA 876 0.379 MGRAPCCDKANVKRGPWSPEEDSKLKSYIQQYGTGGNWIALPSKIVGLKRCGKSCRLRWLNYLRPNLKHGSFSEEEDNIICSLYVNIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLTKQKKDQQSQTRRAFRLNQEIKRENGNLVLPNEVINISQTPNYLQTEHYSFPNPSFIQNYNLKEIEFSDNHQLQGINSQYPCDIYFQQDQLSYDPSTINNINSAGLAYVNHQQTDGSMKIDSGANSTFIESSNWGDISSLVSDYEGCHQQTMIQEDVTFDESMLFYGMVQTQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3927 291 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Tpr4g3927 291 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Tpr4g3927 291 Gene3D - 7 69 - -
Tpr4g3927 291 PANTHER OS09G0431300 PROTEIN 1 243 - -
Tpr4g3927 291 SMART sant 68 116 IPR001005 -
Tpr4g3927 291 SMART sant 13 65 IPR001005 -
Tpr4g3927 291 CDD SANT 71 111 IPR001005 -
Tpr4g3927 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
Tpr4g3927 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tpr4g3927 291 CDD SANT 16 63 IPR001005 -
Tpr4g3927 291 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tpr4g3927 291 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Tpr4g3927 291 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Tpr4g3927 291 Gene3D - 71 143 - -
Tpr4g3927 291 PANTHER OS09G0431300 PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3927 Tpr-Chr4 45573293 45574869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3927 1 127 MYB Transcription Factor Family AT3G49690 85.039 4.77e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g3927 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3927 K09422 - gmx:100791406 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5655 2 65508066 65509924 Tpr4g3927 4 45573293 45574869 PCT