Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3924 ATGGGTCTAAATAACCAAGATGCAAGTAACAATCCAAGCCTTCAACTTATTCTAGGCTTAGCTCTCACTCTTACCAAACAAGACACACCACCATCATCCAACAACGTTGTTACAAAACCATATTCATCAAGTAACAACAATAACTATGAAACAGAACCATCTTTAACGTTGGGTTTATCCACTAAAAGTTACTATGAAGAACCTCTTGATTTTTCAACACAAACAAATTCACCTCATCATAGCGTTGTTTCAGCTTCCTTCTCTAGTGGAAGAGTGAAGAGAGAAAGAGATGTTAGTAGTGAATTAGAAATGGAAACAACTGAAATAGAGAGAGTTTCTTCAAGAATTAGTGATGAAGATGAAGATGGTGCCACTGCAGCTAGAAAAAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGTTTCAAACAACACAGCACTCTTAATCCTAAACAAAAACAAGCTTTAGCCAGAGAGTTAAATCTAACACCCCGACAAGTTGAAGTTTGGTTCCAGAACCGAAGAGCTAGGACAAAGCTGAAGCAAACAGAGGTAGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAATAGGAGACTACAAAAAGAGGTGCAAGAATTGAAGGCACTAAAATTAGCACAACCTTTGTATATGCCTATGCCAGCTGCTACTCTTAGTATGTGTCCTTCTTGTGAGAGACTAGGTGGTGGTGGTGGCGGCGGTGTTAACGGTGGTTCTTCCAATAAGAACAATTTCTCAATGGCTCCTAAGCCTCACTTTTATAACCCCTTTACAAATTCTTCTGCAGCATGTTGA 837 0.3847 MGLNNQDASNNPSLQLILGLALTLTKQDTPPSSNNVVTKPYSSSNNNNYETEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSASFSSGRVKRERDVSSELEMETTEIERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKQHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMPMPAATLSMCPSCERLGGGGGGGVNGGSSNKNNFSMAPKPHFYNPFTNSSAAC* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3924 278 Coils Coil 190 220 - -
Tpr4g3924 278 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Tpr4g3924 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 16 278 - -
Tpr4g3924 278 SMART HOX_1 126 188 IPR001356 GO:0003677
Tpr4g3924 278 SUPERFAMILY Homeodomain-like 122 185 IPR009057 -
Tpr4g3924 278 Gene3D - 132 182 - -
Tpr4g3924 278 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Tpr4g3924 278 CDD homeodomain 128 185 IPR001356 GO:0003677
Tpr4g3924 278 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Tpr4g3924 278 PANTHER - 16 278 - -
Tpr4g3924 278 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Tpr4g3924 278 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3924 Tpr-Chr4 45516121 45517974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3924 1 278 Homeobox Transcription Factor Family AT4G37790 59.655 2.27e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr4g3924 Homeodomain 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3924 K09338 - gmx:100807123 356.681