Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3916 ATGATTCAAATTTCATCAACCAACTACATGCCTCAATTACTTGGAATGGAGGATGCTTTGTTTAATGATCATGATTACCCAATGGATTCATTTGCATTCGAATATGATGATATGGCATATTTCAAGTCTTTCTCAGAATCACCACCAGAGAGTTCTTATTCCTCTCCGAATAACAATCATAAACGCTTTCATTCCCAAAGCACGCAAAACAGCTCTTTCCCGATTCATAGTAGTCCTGATCAATCTGTTGCTTCAGCAACACCGCCAACTAAACTACTCAAAGCTTCTCCCAAAATCATTTCATTTGACCACTCCGATACATCTTCTGCTCGACAATTCTATGACGTGGATGCAAAGGTTAAGAAGCCTAAAGCCGAGATTGAGTATGGTGAAAACTTAAATTTTGCAGCTTTGATTTCTCAAGGTGAAAACAAGGTCGCGAATAGAAACCCAATCCAAGCTCGAGATCATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTAGCCAGAGGTTCATTGCTCTTTCCTCCATTCTTCCTGGACTCAAAAAGATGGACAAGGCAACTATATTGGAAGATGCAATAAGTCATTTGAAAGCACTAAATGAAAGAGTGAAGAATTTAGAGGAACAAGTAGCCGATAAAAAAGTCGAATCCGCAGTTTTTGTGAAGAGATCTATCATCTTTGCCGATGATGATAGCTCCTCATGCGACGAGAACTCAGATCAATCGCTCCCGAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACTGCAACAAAAACACCGGCCGAACCGCAACCACAATACTCAACGAACTCGAAAAGCACCATCTCACCGTTCAAAGTAGTTCTATTTTGCCATTTGGAAATAATTATCTTGACATAACCATTATTGCTCAGATGAACAAAGAATATTGCTTGACAATAAAGGAACTCATAAGAAGCATAAGTCATGTTTTGAGGAAGCTCATTTGA 990 0.3939 MIQISSTNYMPQLLGMEDALFNDHDYPMDSFAFEYDDMAYFKSFSESPPESSYSSPNNNHKRFHSQSTQNSSFPIHSSPDQSVASATPPTKLLKASPKIISFDHSDTSSARQFYDVDAKVKKPKAEIEYGENLNFAALISQGENKVANRNPIQARDHVMAERKRREKLSQRFIALSSILPGLKKMDKATILEDAISHLKALNERVKNLEEQVADKKVESAVFVKRSIIFADDDSSSCDENSDQSLPKIEARVSGKDMLIRIHCNKNTGRTATTILNELEKHHLTVQSSSILPFGNNYLDITIIAQMNKEYCLTIKELIRSISHVLRKLI* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3916 329 Gene3D - 148 214 IPR036638 GO:0046983
Tpr4g3916 329 Pfam Helix-loop-helix DNA-binding domain 156 201 IPR011598 GO:0046983
Tpr4g3916 329 PANTHER BHLH TRANSCRIPTION FACTOR 5 328 - -
Tpr4g3916 329 Coils Coil 191 218 - -
Tpr4g3916 329 MobiDBLite consensus disorder prediction 51 88 - -
Tpr4g3916 329 PANTHER TRANSCRIPTION FACTOR NAI1 5 328 - -
Tpr4g3916 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983
Tpr4g3916 329 SMART finulus 158 207 IPR011598 GO:0046983
Tpr4g3916 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3916 Tpr-Chr4 45405831 45407938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3916 148 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.663 9.82e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3916 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3916 - - mtr:MTR_4g097920 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3916 4 45405831 45407938 Tpr4g3916 4 45405831 45407938 ECH
Tpr2g5646 2 65378174 65381585 Tpr4g3916 4 45405831 45407938 PCT