Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3915 ATGGAAGAATCATGGACTAATTGGTTGTGTGATATGGAACCAGATGATTACAGATTCATCAACGAATCAAGCATAAACACAGACATTAATCAAGTTAGTAGTTTAGAGAGACCTTCAAAGTTACTCAAAACAGTTTCTTCTTCTTCTTCTTCCCCTTGCTCATACATTCTTACATTTGAAAATGAGAATCCACCACCAATAAAGGTTCAACCAGCTTTGAAGACAAAAACCAAAGTTGTGAACTCAAAGAATGAACAAAGAAGGGTTAATACTCAAGAGAGCAACATGAAGAAAAGTTCATTTTCCAAATCTACAACTCATCATCACACACCAGATCACATAATTGCTGAGAGATTAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCACTTATTCCAAACCTCAAAAAGATGGACAAAGCCTCTGTATTAGGTGATGCTATAAAGTATGTGAAGGAGCTTAAAGAGCAAGTGAAAGTGTTGGAAGAGCAAACCAAAAAGAAAAGTGTAGAATCAGTTATGGTTGTGAAGAAATTGTCTCAACTTTATGTGGATGAAGATGTTTCAGACACTTCCTCAAATTCATGTGATGAAAACTCAGATGAAACCTCAAAAACATATTTGTCATCATTGCCAGAAGTTGAAGCTAGGTTGTCGGGGAAGAATGTGTTAATAAGAATTCTGTGTGAGAAAGATAAAGGAGTGATGGTGAATGTATATAGAGAGATAGAGAAACTTCATCTCTCAGTTATCGATGCTAGTTCATTTTCCTTTGGTTCCTCTGTTCTTGCCATAACCATCATCACCCAGATGGAGGAAGAGTTGAACACGAGCGTCCAGAAAATGGCAAAACAACTGAGATTTGGACTGGTGCAATTGAATTAG 894 0.368 MEESWTNWLCDMEPDDYRFINESSINTDINQVSSLERPSKLLKTVSSSSSSPCSYILTFENENPPPIKVQPALKTKTKVVNSKNEQRRVNTQESNMKKSSFSKSTTHHHTPDHIIAERLRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKVLEEQTKKKSVESVMVVKKLSQLYVDEDVSDTSSNSCDENSDETSKTYLSSLPEVEARLSGKNVLIRILCEKDKGVMVNVYREIEKLHLSVIDASSFSFGSSVLAITIITQMEEELNTSVQKMAKQLRFGLVQLN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3915 297 Coils Coil 147 174 - -
Tpr4g3915 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Tpr4g3915 297 Gene3D - 101 172 IPR036638 GO:0046983
Tpr4g3915 297 MobiDBLite consensus disorder prediction 81 101 - -
Tpr4g3915 297 MobiDBLite consensus disorder prediction 81 111 - -
Tpr4g3915 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 175 IPR036638 GO:0046983
Tpr4g3915 297 Pfam Helix-loop-helix DNA-binding domain 113 157 IPR011598 GO:0046983
Tpr4g3915 297 PANTHER BHLH TRANSCRIPTION FACTOR 33 297 - -
Tpr4g3915 297 PANTHER BHLH TRANSCRIPTION FACTOR 1 28 - -
Tpr4g3915 297 SMART finulus 114 163 IPR011598 GO:0046983
Tpr4g3915 297 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 28 - -
Tpr4g3915 297 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 33 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3915 Tpr-Chr4 45385840 45390011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3915 17 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.624 1.64e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3915 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3915 - - cam:101494527 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3915 4 45385840 45390011 Tpr4g3915 4 45385840 45390011 ECH
Tpr2g5645 2 65365044 65367448 Tpr4g3915 4 45385840 45390011 PCT