Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3914 ATGGAGGAAATCAACAACACACCAATCAACAACGTCTCAGAAACCAGTAGCTGGTTATCTGATTTGGAAATAGATGAGTGCAATATATTTCCTGAGGAATGTAACCTTAATTTCTTAGATGCTGATGAGAAAGAAGAGTTTCTTTCACATGACATAGCTACTGTCTTTCAAGAACAAACCCAACAACAATGTTTGACTTCAGAGTCAACACTCAATAACTCATTCACTGATGAAACAAATTTTGACTCTTTTGACTTTGATTTTGAAATTGAGAGACCAACCAAGCAACTCAAAACAATTGATCAAAGTGAAAACATCATTGAAACCTTGTCAACAAAACTTTCTCCATCATTTCAATCTCTGATTCTGTCTTTTGACAACCCCCGAAACTCACCTCGTACTACCAACACCCCCCAAATTCATGGATTCACTCCTACCTTAAACTCAAAACAAAATGAAACAGTGTCGGTGTTTCCACCCCAATCAGGAAACATGAATGTTTCAACTCAGATTCCAAAAGGGTCATCCAAAAACCAAAACTTGGAAACAAAAACCTCACAAAACAAAAGGTCTAGAGCTCATGGTCATGATCATATCATGGCTGAGAGAAAACGAAGAGAGATACTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGACAAAGCTTCAGTATTAACCGACTCTATCAAATATGTGAAAGAACTTAAAGAGCGTTTGAAAGTTTTGGAAGAACAGAACAAGAAACAAGAAGCAGAGTCTGTGGTTATTCCTAACAAACCAAACCTCTGCAGTGATTTTGATAACCCCTCATCATGTGATGAGAGTATTCAAGGTGCTGCTAATGCCAATGAATCAGTCTTACAAGTGGAGGCAAGAGTGTCAGGGAAAGAGATGCTGATACGGATTCATTGCCAGAAGCAGAAGGGACTTTTGGTTAAAATCATGGCTGAGATTCAAAGCTTTCAACTATTTTTTGTGAATAGCAGTGTTATACCCTTTGGAGATTCCATGGACATTACTATCATTTCTCAGATGGGTGAAGGGTACAACTTGAGCATTAAGGAACTTGTGAAGAACCTGCGGATGGCTGCATTGAAGTTTATGTCATCATGGCACTAA 1140 0.3851 MEEINNTPINNVSETSSWLSDLEIDECNIFPEECNLNFLDADEKEEFLSHDIATVFQEQTQQQCLTSESTLNNSFTDETNFDSFDFDFEIERPTKQLKTIDQSENIIETLSTKLSPSFQSLILSFDNPRNSPRTTNTPQIHGFTPTLNSKQNETVSVFPPQSGNMNVSTQIPKGSSKNQNLETKTSQNKRSRAHGHDHIMAERKRREILSQSFIALAALVPNLKKMDKASVLTDSIKYVKELKERLKVLEEQNKKQEAESVVIPNKPNLCSDFDNPSSCDESIQGAANANESVLQVEARVSGKEMLIRIHCQKQKGLLVKIMAEIQSFQLFFVNSSVIPFGDSMDITIISQMGEGYNLSIKELVKNLRMAALKFMSSWH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3914 379 Gene3D - 178 259 IPR036638 GO:0046983
Tpr4g3914 379 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 8 376 - -
Tpr4g3914 379 SMART finulus 199 248 IPR011598 GO:0046983
Tpr4g3914 379 Pfam Helix-loop-helix DNA-binding domain 198 242 IPR011598 GO:0046983
Tpr4g3914 379 MobiDBLite consensus disorder prediction 169 198 - -
Tpr4g3914 379 MobiDBLite consensus disorder prediction 169 186 - -
Tpr4g3914 379 PANTHER BHLH TRANSCRIPTION FACTOR 8 376 - -
Tpr4g3914 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Tpr4g3914 379 Coils Coil 232 259 - -
Tpr4g3914 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 261 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3914 Tpr-Chr4 45380411 45383173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3914 15 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 35.519 2.07e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3914 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3914 - - gmx:100788128 402.905