Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3913 ATGGAAGAAATCAACAACACACCAATGAACTCATCAGAAACCAGCAAATGGTTATCTGATTTGGAAATGGATGAATACAATTTATTTTCTGAGGAATGCAACCTTAATTTCCTAGATGCTGGTGAGGAAGAGTTTCTTTCACATGACATAGCTACTGTTTTTCAAGAACAACAAAACCAACAACCACCTTTGACTTCAGAGTCCACAGATGAAACAAATTTTGAGTTTTTTAACTTTTATTTTGAAATTGAGAGACCAATCAAGCACATGAAAACAACTAATGACAGTGACAAAATCACTGAAACTTTGTCACCAAAACTATCTCCATCATCATCTAACTCATCATTTCAGTCTCTGATTCTTTCTTTTGAGAACCCCCCAAACTCACCTCCTACTATCAACACCCCCCAAATTTATGGTTTTGACCCTACCTTGAACTCAAAACAGAACGAAACAGAGTCATTGTCACCACCCCAATTGGGAAACAGACATGGCTCATCTCAAATTCCAAAAGGGTCATCAAAAAATGAAAACTTGGAAACAAAAACATCACAAAACAAAAGGTCTAGAAATCATGGTCATGATCATATTATAGCTGAGAGAAAAAGAAGAGAGAAACTCAGCCAAAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGACAAAGCTTCTGTATTAACTGACTCTATCAAATACATGAAAGAGCTTAAACAGCGTTTGGAAGTTTTGGAAGAACAGAACAAGAAAACAGAAGCAGAGTCGGTGGTTGTAATAAACAAACAAGATCTATGCATCGGTGATGATAATTCATCATGTGATGAGAGTATTGAAGGTGCTGATGTTGATGCCAATGAATCAGTCTTACAAGTGGAAGCAAGAGTGTCAGGGAAAGAGATGCTGATTCGGATTCACTGCAAGAAGCACAAGGGATTTTTGGTTAAAATCATGGCTGAAATTCAAAGCTTTGAATTATTTGTTGTCAATAGCAGTGTCTTACCCTTTGGAAATTCTATTCTTAACATTACTATAATTGCTCAGGTGGGTGAAGGATACAACTTGAGTATAAAGGAACTTGTGAGGAAGCTACGCATGGCAACGTTGAAGTTTATGTCATTATAA 1131 0.3669 MEEINNTPMNSSETSKWLSDLEMDEYNLFSEECNLNFLDAGEEEFLSHDIATVFQEQQNQQPPLTSESTDETNFEFFNFYFEIERPIKHMKTTNDSDKITETLSPKLSPSSSNSSFQSLILSFENPPNSPPTINTPQIYGFDPTLNSKQNETESLSPPQLGNRHGSSQIPKGSSKNENLETKTSQNKRSRNHGHDHIIAERKRREKLSQSFIALAALVPNLKKMDKASVLTDSIKYMKELKQRLEVLEEQNKKTEAESVVVINKQDLCIGDDNSSCDESIEGADVDANESVLQVEARVSGKEMLIRIHCKKHKGFLVKIMAEIQSFELFVVNSSVLPFGNSILNITIIAQVGEGYNLSIKELVRKLRMATLKFMSL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3913 376 MobiDBLite consensus disorder prediction 181 202 - -
Tpr4g3913 376 Pfam Helix-loop-helix DNA-binding domain 196 240 IPR011598 GO:0046983
Tpr4g3913 376 MobiDBLite consensus disorder prediction 148 202 - -
Tpr4g3913 376 Gene3D - 176 257 IPR036638 GO:0046983
Tpr4g3913 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Tpr4g3913 376 Coils Coil 230 264 - -
Tpr4g3913 376 MobiDBLite consensus disorder prediction 148 180 - -
Tpr4g3913 376 PANTHER BHLH TRANSCRIPTION FACTOR 10 375 - -
Tpr4g3913 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 257 IPR036638 GO:0046983
Tpr4g3913 376 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 10 375 - -
Tpr4g3913 376 SMART finulus 197 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3913 Tpr-Chr4 45368776 45372511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3913 188 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.619 3.21e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3913 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3913 - - gmx:100788128 387.497