Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3909 ATGAACATCTCACTGCAAGTTGACCAATCTGTACAAGTAACCAAAGATATGGAAGAAATCAACAACACACCAATTAACTCATCTTTTCAGTCTCTGATTCTGTCTTTTGACAATCCCCTAAACTCACCTCCTACTACCAACACCCCCCATATTTATGGAAACAAACATGTCTCAACTCAAATTCCAAAAGGGTCATCAAAAAATGAAAACTTGGAAGCAAAAACCTCACAAAACAAAAGGTCTAGATATCATGGTAATGATCATATCATGGCTGAGAGAAAACGAAGAGAGAAACTCAGCCAGAGTTTCATTGCTCTTGCAGCACTTGTTCCAAACCTAAAAAAGATGGACAAACAATCTATATTAACTGACTCTATCAAATACGTGAAAGAGCTTAAACAGCGTTTGGAAGAACAAAACAAGACAACAAATGCAGACTCGGTGGTTGTTATGAACAAACAAGACCTATGCATCAATAATGATAATTCATCATATGATGAGAGTATTGGAGGTGCTTTTGATGCCAATGAATCTCTCTTACAGGTGGAAGCAAGAGTTTCAGGTAATATGGGGAGCTTACAGGAGAGGCTTCTTAAGATTTCTCAAAAGAAGCAAAAGCATGTTAAGGCAAGTGGTGTGGGTGGGTCTTCTTCGAGTGCAGTGGCTGAAGATGATGTCATTGTTGTTGATCAGTCTAAAGAGACGAGGAGGCCAAAAAATAGGGCCTCATCAGTGGTCGAGGATCCAGAGAGAGTCAAAAGGACCCGGGTGGACCTAGAATTTGGGGATAAGGAGGTCGACAAGTTTATTCTACCCGCCTGTATAGGGAACAATGGCTTGCTTGATAGGAATATCGCAGTCCAGATATCTCCTGCTAGTGTCTCCATTGTCAATGAAATGGGACCTGTAAGCCTAAAAAATGATATAGCAGCGGACACAGTGGCTGTCCTCCGAATTCTCGAGGTGGTCAACATTCTGAATGGTAGGGAGTGTCGGTATTTGAAGGAGAAATGTGAACTTCATGAGCGCGTTGTTAAGCTCAAAAGGAAGCATACAAAGTTGAAGAATGACTTTCTCAACTATAAAGAAAAGTTCAAGGTGCATGCCAGTATTATCCTCGACAATACCAAGAAGGAGGAAGAGATTAAAGAGTTGCGGAGGAGTCAGGAGACTTGGGTTGAAGAGAAGACTAAATTGGAGGATTTTCTTAAGTCTTATGGGAGCCGGACCTTGGATGGGGAAGTATCAACAGTTGATAGGTCTGACGAGTTGGCAGGGCTGGACCGAGCAACGTTGATCTCCAAGATCCACAACTTGGAGGGTGAGATGCTCAACTCAGCCCAAGAGAGTTTTGACAATGCCTTTTCCCAGGTGAAGTGTTTGAACCCTAAAATCGAGTTGAAGACTGAGGGTATGAGTGTGTTCATGGTCGTTGATGGTGATCGCTTGACTCTTCCTGTCGGGCAAGATGAAGCAGAAGATGTTTGA 1488 0.4247 MNISLQVDQSVQVTKDMEEINNTPINSSFQSLILSFDNPLNSPPTTNTPHIYGNKHVSTQIPKGSSKNENLEAKTSQNKRSRYHGNDHIMAERKRREKLSQSFIALAALVPNLKKMDKQSILTDSIKYVKELKQRLEEQNKTTNADSVVVMNKQDLCINNDNSSYDESIGGAFDANESLLQVEARVSGNMGSLQERLLKISQKKQKHVKASGVGGSSSSAVAEDDVIVVDQSKETRRPKNRASSVVEDPERVKRTRVDLEFGDKEVDKFILPACIGNNGLLDRNIAVQISPASVSIVNEMGPVSLKNDIAADTVAVLRILEVVNILNGRECRYLKEKCELHERVVKLKRKHTKLKNDFLNYKEKFKVHASIILDNTKKEEEIKELRRSQETWVEEKTKLEDFLKSYGSRTLDGEVSTVDRSDELAGLDRATLISKIHNLEGEMLNSAQESFDNAFSQVKCLNPKIELKTEGMSVFMVVDGDRLTLPVGQDEAEDV* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3909 495 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 21 206 - -
Tpr4g3909 495 Coils Coil 375 395 - -
Tpr4g3909 495 SMART finulus 89 138 IPR011598 GO:0046983
Tpr4g3909 495 Gene3D - 68 146 IPR036638 GO:0046983
Tpr4g3909 495 MobiDBLite consensus disorder prediction 61 81 - -
Tpr4g3909 495 Pfam Helix-loop-helix DNA-binding domain 88 132 IPR011598 GO:0046983
Tpr4g3909 495 Coils Coil 126 146 - -
Tpr4g3909 495 PANTHER BHLH TRANSCRIPTION FACTOR 21 206 - -
Tpr4g3909 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Tpr4g3909 495 Coils Coil 344 364 - -
Tpr4g3909 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 143 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3909 Tpr-Chr4 45337864 45340502 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3909 80 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.846 2.27e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3909 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3909 - - var:108333272 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3909 4 45337864 45340502 Tpr4g3909 4 45337864 45340502 ECH