Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3907 ATGGAGGAAATCAACAATACACCAATGAACGTAGCAGCTGATAGCAACTGGTTATCTGATTTGGAAATGGTGGATGAATACATATTATTTGATGAGGATTGTAACTTGAACTTGCTTGATGCTAATCAAGAACAGTTACTCTCACATGACATAGCTAGTGCCTTTGAGGAACAAAGACAAACCCTGCAACAATGTTTAACTACAGAATTCATTTCCACAACAATGAGCAAAATTTTCACCGATGAAACAAGTTTCGAGTCTTTTGATGACTTTGATTTTGAGAAACTAGCTAAAGAGTTGAAAACAATTGATCAAAGTAAAAATGCCGAAAACTTTTCACCACAATTCTCTGCATCAACACCCTCTATTCAGTCTCCTCAGATTTTGTCTTTTGACAATCCAAACCCAACAGAGTTTTATAGTTTTGATCAAACACAGAACGAGATGGTGACTTCATTGTCATTGCCCGAATTGGGGAACATACAGTTTTCAACTCAAATCTCAAAAGCGTCTTCGGAAAATCAAAACTTGGAAACTAAAACATCACAACCTAAGAGGCCTCGAGCTCATGGTTTGGATCATATCATGGCCGAGAGAAAACGAAGAGAGAATCTCAGCAAGAGTTTCATTGCTCTTGCAGCTCTCGTTCCAGGCCTAAAGAAGATGGACAAGGCTTCGATATTAGCGGATACAATCAAATACCTCAAAGAGCTTAAAGAGCGTTTGGCAGTTTTAGAAGAGCCGGGGAAGAAAACAAATGAAGATCAGTCCATGGTGGTTACGACCAAACCTGACGTCTGCAGCGACCAGCATTACTCATCATCGCATGAGAACACTGAAACTGAAAGTGCTGCTGATGGTATTGCCACTGGTCAATCACTCTTCAAGGTGGAAGCAAAAGTGAAAGGGAAAGATATGTTGATTCGGATCCACTGCCAAAAGTATGATGGACTTCTTGTTAAAATCATCACTGAGATTCAAAGTTATCAACTATCTGTTGTCAATAACAGTGTTTTAGCCTTTGGAGATTCTATCCTTGACATTACCATCATTGCTGAGATAGGTGAAGGGTACAACTTGAGCATAAAGGGACTTGTGAAGCACCTAAGCATTGCAGCATTGGAGTTTATGTCATCATAA 1140 0.3947 MEEINNTPMNVAADSNWLSDLEMVDEYILFDEDCNLNLLDANQEQLLSHDIASAFEEQRQTLQQCLTTEFISTTMSKIFTDETSFESFDDFDFEKLAKELKTIDQSKNAENFSPQFSASTPSIQSPQILSFDNPNPTEFYSFDQTQNEMVTSLSLPELGNIQFSTQISKASSENQNLETKTSQPKRPRAHGLDHIMAERKRRENLSKSFIALAALVPGLKKMDKASILADTIKYLKELKERLAVLEEPGKKTNEDQSMVVTTKPDVCSDQHYSSSHENTETESAADGIATGQSLFKVEAKVKGKDMLIRIHCQKYDGLLVKIITEIQSYQLSVVNNSVLAFGDSILDITIIAEIGEGYNLSIKGLVKHLSIAALEFMSS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3907 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Tpr4g3907 379 SMART finulus 195 244 IPR011598 GO:0046983
Tpr4g3907 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 252 IPR036638 GO:0046983
Tpr4g3907 379 Pfam Helix-loop-helix DNA-binding domain 194 238 IPR011598 GO:0046983
Tpr4g3907 379 PANTHER BHLH TRANSCRIPTION FACTOR 7 378 - -
Tpr4g3907 379 MobiDBLite consensus disorder prediction 169 191 - -
Tpr4g3907 379 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 378 - -
Tpr4g3907 379 Gene3D - 173 254 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3907 Tpr-Chr4 45319361 45321931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3907 165 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.935 2.17e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3907 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3907 - - mtr:MTR_4g098035 397.127