Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3906 ATGGCTGGTTTGGATTTAGGAAATGCATCAAGCTTTATGCAAAACCTTCACAGACAAAACTTACACCTTCAGCAACAACAACAACAGCAACACCATCAACACCAAAACCAACACGATTCTGACGAACAGCAAGAGTCAAATCGTGTTGGTGGAGGTGGTGCAGCTCCGTTTTCATCAAACGATGAAGATGACCGAAGTCAAGGCTTGGAGCTAGGTTCAGCAGCCGGTCCAGGTGACGTGGTGGGACGCCGTCCACGCGGCAGACCACCCGGATCGAAAAACAAGGCAAAGCCGCCGGTGATCATTACCCGTGAGAGCGCCAACACTTTGAGAGCTCATATTCTTGAAGTTGCTAGTGGCTCCGATGTGTTTGAATGTGTAACAACCTACGCTCGACGTCGTCAGCGTGGGATCTGTGTTTTAAGTGGAAGTGGAACCGTCACTAATGTAAGTCTCCGGCAACCGGCGGCGGCTGGTGGTGTTGTGACACTAAATGGAAGATTTGAGATATTGTCTTTATCTGGATCTTTTCTTCCTCCACCTGCTCCTCCCGGCGCGACTAGCTTAACGATTTATCTCGCCGGAGGACAAGGACAGGTGGTCGGAGGAAGTGTGGTTGGTGAACTTATCGCAGCGGGACCGGTGATTGTTATCGCTGCTTCTTTTACTAATGTAGCTTATGAGAGATTGCCTTTGGAGGAAGAGGAGCAAGTTCAGATTCAAGCAGGAGGTGGTGGTGGTTCTCAAGGCTCTGGTGGTGGCGGCGGCGGAAATAACAATCCATTTCCTGATCCTTCATCTGGTTTGCCATTTTTCAATCTGCCATTGAATATGCAAAATGTTCATCAGCTGCCTGTTGATGGTTGGGCGGGAAATAATTCAGCTGCACGTCAGCCTTTTTGA 903 0.4928 MAGLDLGNASSFMQNLHRQNLHLQQQQQQQHHQHQNQHDSDEQQESNRVGGGGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGGVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLEEEEQVQIQAGGGGGSQGSGGGGGGNNNPFPDPSSGLPFFNLPLNMQNVHQLPVDGWAGNNSAARQPF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3906 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 300 IPR014476 GO:0003680
Tpr4g3906 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 241 - -
Tpr4g3906 300 CDD DUF296 111 194 IPR005175 -
Tpr4g3906 300 MobiDBLite consensus disorder prediction 21 101 - -
Tpr4g3906 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Tpr4g3906 300 PIRSF ESCAROLA 8 300 IPR014476 GO:0003680
Tpr4g3906 300 Gene3D - 110 242 - -
Tpr4g3906 300 ProSiteProfiles PPC domain profile profile. 107 243 IPR005175 -
Tpr4g3906 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3906 Tpr-Chr4 45294579 45296297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3906 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.375 2.52e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3906 - - pvu:PHAVU_003G230600g 364.77