Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3905 ATGGATTCCCGCTCACCACAACAACAACCACCACCACAACAATCAACCATCATGGTGGGACCCACATCTTACGCTCCAACAAACACCTCCATGATCAGCCCTAATTCCTCCGCCACCAACCTCATGGCACCCGCCACCGCTCGATTTCCTTTCTCCTCTTCTCAACAATCGGAGCCATTCTCCGTCACTCACGACGCTCCTCCTTCCTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCTAGGAAATACTCCCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTACTCGTGTTTCTTCTCCCGCCGCTGCTACTTCCGCCTCCGCTGGTGATTCCGGTAACGCTGATGCTCCTCCTAAGAAACATAGAGGAAGACCTCCTGGTTCTGGGAAGAAACAGTTAGATGCGCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTAATTGTGGTGGAGTCTGGTGAGGACATTACCGAAAAAGTTATGTCCTTTTTACAGATAGGGCCTCGGACGGTTGTTATTCTTTCTGCAGTTGGTGCAATCAGCTGTGTAACCCTTCGACAGCCAACATTATCTGGCGGTGTTGCAAGATATGAGGGCCAATATGAGATCATATCATTATCAGGTGATATGCAGCTATCTGAAAATAATGGTGAACAGAACAGAACAAGCAGTTTATACGTTTCCCTTGCTGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAATGCTAACTGCAGCGTCGGCTGTACAGGTCATTGTTGGTAGCTTTATAATGGATCAGAAAAAGTCAAGCTCGAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAAATTCGCAAATGCTGAACTTTGGAGCTCCTACGACTCCAACTAGTCCCACCTCTCAAGGGCCTTCAACCGAATCCTCGGAGGAAAATGATCACAATAGTAACTTTAGTAGGGGTCCTGGAATCTACAATAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCACCATCCACTATGGGCTGGCCAATCTCATCAGTGA 1050 0.4838 MDSRSPQQQPPPQQSTIMVGPTSYAPTNTSMISPNSSATNLMAPATARFPFSSSQQSEPFSVTHDAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTRVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVIVVESGEDITEKVMSFLQIGPRTVVILSAVGAISCVTLRQPTLSGGVARYEGQYEIISLSGDMQLSENNGEQNRTSSLYVSLAGADGRVLGGAVAGMLTAASAVQVIVGSFIMDQKKSSSSMVKSGPSSAPNSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGIYNNANQPVHNNMQQMYHHPLWAGQSHQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3905 349 CDD DUF296 147 261 IPR005175 -
Tpr4g3905 349 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Tpr4g3905 349 SMART AT_hook_2 76 88 IPR017956 GO:0003677
Tpr4g3905 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Tpr4g3905 349 Gene3D - 148 274 - -
Tpr4g3905 349 MobiDBLite consensus disorder prediction 269 329 - -
Tpr4g3905 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 262 - -
Tpr4g3905 349 ProSiteProfiles PPC domain profile profile. 143 283 IPR005175 -
Tpr4g3905 349 MobiDBLite consensus disorder prediction 1 70 - -
Tpr4g3905 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 319 IPR039605 GO:0003680
Tpr4g3905 349 MobiDBLite consensus disorder prediction 1 141 - -
Tpr4g3905 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 41 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3905 Tpr-Chr4 45273846 45281188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3905 52 349 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 46.131 9.54e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3905 - - mtr:MTR_4g098460 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5611 2 64932957 64935123 Tpr4g3905 4 45273846 45281188 PCT