Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3902 ATGCCAGTTCCACTTGCCCCCTACCCAACTCCACCACCAGCTCCATATACACCACCTCCAACAAATGGTGGACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTTTAATGTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCTCCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACAAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTTGCACATGTCAATTGTGGTAACTGCAGGATGCTACTTATGTACCAATATGGAGCAAGATCCGTGAAGTGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACAACTGAGCAGCAGAAGTTCAGCACCTAA 447 0.472 MPVPLAPYPTPPPAPYTPPPTNGGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFST* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3902 148 PANTHER PROTEIN LOL1 1 143 - -
Tpr4g3902 148 PANTHER PROTEIN LSD1 1 143 IPR040319 -
Tpr4g3902 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Tpr4g3902 148 MobiDBLite consensus disorder prediction 1 20 - -
Tpr4g3902 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Tpr4g3902 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Tpr4g3902 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Tpr4g3902 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Tpr4g3902 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Tpr4g3902 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3902 Tpr-Chr4 45257509 45259706 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tpr4g3902 zf-LSD1 8.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3902 - - mnt:21406053 258.84