Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3896 ATGGCAGAGGCATCACTGCCACCAGGTTTTCGTTTCCGTCCAACCGACGAAGAACTGATTGGATACTATCTGAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATCCCAATGATTGATTTTTACAAATTTGATCCATGGGAGTTACCCGAGAAATCATTTCTACCAAAACGAGATTTAGAATGGTTTTTCTATTGTCCGCGAGATCGAAAGTATCCAAATGGATCAAGAACAAATAGAGCTACTAAAGCTGGGTACTGGAAAGCCACCGGAAAAGAGAGAGAGATTGTGTGCCAGGGTAGTTCACCCACCATCACAGGTTACTGCAAAACACTTGTTTTCTATCTTGGAAGGGCCCCTTTAGGGGATAGAACTAATTGGATCATGCATGAGTATCGCCTAGCCGATGACCTTAGCCAAGACTTTAAGGGTGGTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGAGCAAGAGGGCTGAAACAAGTTCCAATGATGTTACTTCTCAAGCAAGTTACCTGAATAATGACAGTGGATCACAAAATATGGCTCCAATTGCTGAGTTTAGCAATGTATCCATAGAAACCAATCCTTCAAACTTCTGGATCTCTCCTGATATGATTCTTGATTCTTCAAAGGAGTATACTCATATACATGATGCAGTGTCTGAATATTTTCCAAGGTGTGATTCACCAAGGCAATCATTGGAACAAATAACAATTTCACCTAGTTTATCCTACTCCAATTTGAATGGTGAAATTGAATTTTCTGATAATACAAGTCAAATTGGATGCATGTCATCTTACTCAAGTCAGGGAAATTTCATGGACTATTATGGAAATTGGGATGTTCCTTATGAGGTTTATGATCAGATTAATTATGTCTCATATTCAGAGCCTTTCTAA 915 0.388 MAEASLPPGFRFRPTDEELIGYYLKRKVEGLEIELDVIPMIDFYKFDPWELPEKSFLPKRDLEWFFYCPRDRKYPNGSRTNRATKAGYWKATGKEREIVCQGSSPTITGYCKTLVFYLGRAPLGDRTNWIMHEYRLADDLSQDFKGGFALCRVIKKNEKSKRAETSSNDVTSQASYLNNDSGSQNMAPIAEFSNVSIETNPSNFWISPDMILDSSKEYTHIHDAVSEYFPRCDSPRQSLEQITISPSLSYSNLNGEIEFSDNTSQIGCMSSYSSQGNFMDYYGNWDVPYEVYDQINYVSYSEPF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3896 304 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Tpr4g3896 304 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Tpr4g3896 304 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Tpr4g3896 304 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 187 - -
Tpr4g3896 304 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 163 304 - -
Tpr4g3896 304 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Tpr4g3896 304 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 163 304 - -
Tpr4g3896 304 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3896 Tpr-Chr4 45210779 45213685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3896 1 281 NAC Transcription Factor Family AT4G17980 56.507 5.99e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr4g3896 NAM 3.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3896 - - mtr:MTR_4g098630 510.375