Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3890 ATGGGTTGCTTTCACTCCAAAACCGCTCATCTTCACTCCCCTGAAGACCCTCCTACTGCTTTACCAGACTCAAAGAAACCCGATCCAGGTGATGATGGAGGTGATGGTGATCAAGAAATTCAGGTTCCAGCATTTAAAGAGTATGGTTTGAATGAACTTAGAAGAGCTACACATGAGTTCAGAACTGATTACATTGTTTCTGAGAGTGGTGAGAAAGCTCCTAATGTGGTTTACAAAGGAAAACTTGAGAATAATCGATTAGTCGCTGTTAAACGCTTCTCCAAACAGTCCTGGCCTGATGCTCAACAGTTTCTGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAAAGAATGGTGAATCTAATTGGTTGTTGTGCCGAAGGAGATGAAAGGCTTTTGGTAGCTGAATACATGCCAAATGATACTTTGTCCAAACATCTCTTTCATTGGGACAAGCAACCGTTACCATGGGAAATGCGTGTTAGAGTTGCATATCATGTCGCCCAGGCACTAGATCATTGTAGCATGGAAAACCGAAAAATATATCACGATCTGAATGCTTATAGGATTCTTTTTGATGAGGATGGTGATCCCCGGTTATCAAGTTTCGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGCACTAATTTGGCCTATACTCCACCCGAATTCTTGCGAACAGGCAGGATAGTCGCAGAGAGTGTGATCTACAGTTACGGCACTGTCCTTCTGGATCTTTTAAGCGGCAAGCATATTCCCCCAAGCCATGCTTTGGACCTAATTAGAGGGAAAAATGCATTGTTGTTGATGGACTCATCCCTAGAAGGGCAATATGCAAATGATGACGCTACAAAGTTGGTTGAGCTTGCATCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGATATTAAGTTTCTTCTCACTGCAGTTACACCTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTGTTAATGGGCCTTACTAAAACCGCGGCAGTGCTACCACTACCAACCATGCTTTCTCCTCTAGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTATTCATGATATATTGTTAAAAACGGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAGTGGACACAACAAGTGCAGGACATCTTGAACACAAAAAAGTTTGGCGATATTGCATTTAGAGACAAGGATTTCAAAAATGCAATTGAGTATTATTCGAAGTTGGTGGTTATGATGTCTGTTCCATCTGCAACCGTCTTTGCAAGGAGAGCCTTCTCCTACTTGATGAACGATCAGGCAGAACTTGCATTAAGAGACGCAATGCAGGCGCAGGTATGCATACCTGATTGGCCAACTGCATTCTACCTACAAGCTCTTGCTCTCTCAAAGCTGGGAATGGAAACTGATGCACAGGACATGCTTAACGATGGAGCAGCCTTTGAAGCAAAGAGGTCTAACAGCTGGCGCGGCTAA 1497 0.4342 MGCFHSKTAHLHSPEDPPTALPDSKKPDPGDDGGDGDQEIQVPAFKEYGLNELRRATHEFRTDYIVSESGEKAPNVVYKGKLENNRLVAVKRFSKQSWPDAQQFLAEAAGVGKVRHKRMVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIVAESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNALLLMDSSLEGQYANDDATKLVELASKCLQFEARERPDIKFLLTAVTPLQKQKEVASHVLMGLTKTAAVLPLPTMLSPLGKACARMDLTAIHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRSNSWRG* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3890 498 SUPERFAMILY TPR-like 389 487 IPR011990 GO:0005515
Tpr4g3890 498 Pfam Protein tyrosine and serine/threonine kinase 76 311 IPR001245 GO:0004672|GO:0006468
Tpr4g3890 498 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Tpr4g3890 498 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Tpr4g3890 498 ProSiteProfiles Protein kinase domain profile. 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3890 498 SUPERFAMILY Protein kinase-like (PK-like) 52 315 IPR011009 -
Tpr4g3890 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 497 IPR045845 GO:0004672|GO:0009742
Tpr4g3890 498 Gene3D Tetratricopeptide repeat domain 388 497 IPR011990 GO:0005515
Tpr4g3890 498 MobiDBLite consensus disorder prediction 19 33 - -
Tpr4g3890 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK2 1 497 - -
Tpr4g3890 498 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3890 Tpr-Chr4 45148065 45152316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3890 14 314 Glycoside Hydrolase AT3G07070 34.043 2.18e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Tpr4g3890 PK_Tyr_Ser-Thr 5.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3890 K14500 - gmx:100793576 927.932