Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3883 ATGGTTTGTACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTCCTCCTTCAGGAAGACATCACTTCTCCTTCTGAGATAAGAACAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGTGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAGGATTCCATATAGCCATAGTGGAGGTGAGTTCAAGCAGTTGCGAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAACGATTGTCTGAACACCACGATGAAGTGCATAGCGCTTGGAGCAGTGGAGTTCCTCAGCAAACCACTCTCCGAGGACAAGCTGAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGCGGTCTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATCTTGCAGCTCCAAACGGAAAACACACAACACGAAAGTAGAGCCGCAGTTGAGTTAGAAAAAGTATCCCAATTTTCTGACAATGACCATGAGCATTATCCAGCTCCTTCAACCCCACAATTGAAACAGGTGGAAAGATTACTAGATGATGGGGATTGTCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATTCGTCGAAACTACTTGTGAAAATTTGAATGCTGAAAGTACTCCTCAACAAAATAAATCTGAAGTTACTCTGGTTCAAAAGGAAGCCGAGGAATTTGCCGACGCTTCTAAGTGTGAGAGTGTTGTTTCACCACGTCCACAAAATGAGAAGGTTCTCAATAATAGTGAAAGTAATACAATGTCTGTGAATAAAGTAGGTGTTCGTAGTCATAAATGCGAGATAAAAGCTAATCGGAAGAAAATGAAAGTAGACTGGACGGCTGAGCTACACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCACGCAATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCGAAGCAAGAAGATCGGAAATGGCTAAATCAAAGAGATCCAACGCAAAGGAGCTATTGTATTCAAAGGCCAATTATGCCTGGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCACCTCCTTTATATCCTATGTGGGGACAATCTGGAACTCAAATGGCTGGAATGCAGGCTTGGGGACCTTCTGGTTATCCCTTGTGGCAGCCTGCAGAAACTTGGCACTGGCAACCATTTCCAGCGATGCATGCAGATACATGGGGCACCCCGGTATTACCACCACCTCAACCTCCTTGCTATTCCTATTCTCAGCCGCAGAATATACCTGCAGTGAGTAACGCTAATGCAGTGGATTACATGTTTGGCATGCCCCACAGTTCCTTTGACGATTATCCGGCGGAGGATGTTATTGACAATGTTGTGACGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAATCCTCCTTCCACAGATAGTGTATTGGCTGAGCTTTCCAGGCAAGGCATTTCCAACATCCCTCCAAGCAACAATGGTTATATTCCCAATTGA 1665 0.4372 MVCTANDLQEWKDFPKGLKVLLLQEDITSPSEIRTKLEAMDYNVSTFCDVNEALSAISSRPEGFHIAIVEVSSSSCEGGFKFLENAKDLPTIMTSNNDCLNTTMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASAVSESLKPVKESVVSILQLQTENTQHESRAAVELEKVSQFSDNDHEHYPAPSTPQLKQVERLLDDGDCQEQTNCSTEKESGEHDGESKFVETTCENLNAESTPQQNKSEVTLVQKEAEEFADASKCESVVSPRPQNEKVLNNSESNTMSVNKVGVRSHKCEIKANRKKMKVDWTAELHKKFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQEDRKWLNQRDPTQRSYCIQRPIMPGPPSYYSNHTLPPPPLYPMWGQSGTQMAGMQAWGPSGYPLWQPAETWHWQPFPAMHADTWGTPVLPPPQPPCYSYSQPQNIPAVSNANAVDYMFGMPHSSFDDYPAEDVIDNVVTEAISKPWLPLPIGLNPPSTDSVLAELSRQGISNIPPSNNGYIPN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3883 554 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 309 364 IPR006447 GO:0003677
Tpr4g3883 554 Pfam Myb-like DNA-binding domain 312 361 IPR001005 -
Tpr4g3883 554 Gene3D - 18 146 - -
Tpr4g3883 554 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Tpr4g3883 554 SUPERFAMILY CheY-like 16 134 IPR011006 -
Tpr4g3883 554 SUPERFAMILY Homeodomain-like 308 366 IPR009057 -
Tpr4g3883 554 SMART REC_2 18 128 IPR001789 GO:0000160
Tpr4g3883 554 Pfam Response regulator receiver domain 22 127 IPR001789 GO:0000160
Tpr4g3883 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 365 IPR017930 -
Tpr4g3883 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 545 - -
Tpr4g3883 554 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 545 IPR044825 GO:0003700|GO:0045893
Tpr4g3883 554 Gene3D - 305 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3883 Tpr-Chr4 45007466 45014230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3883 1 548 Response Regulator Gene Family AT4G18020 48.885 2.12e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr4g3883 Response_reg 3.3e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3883 - - mtr:MTR_4g098870 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g5596 2 64793371 64799213 Tpr4g3883 4 45007466 45014230 PCT