Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3863 ATGGCTGCAACCGCTAATCAATCCTCAGCCACTTCAGAAAGTATTTCCGACAAAGTTTGTGAAGACGAGAACAACGTCAACAACAACGAGGTGACAATGAAGGGGAAGGAAGTTATAGTATCCGAACAACATCAACCTTTGAAAACTAATACCGACTTGCTTCTTGAATTCGTCAAACTCTCTAGTGATAATTCGATTCCTAGGTCGAATGTGCGGGAACAAGATTTTTTCACCCCCTCGAAGGACTTGGGGGCGAGTTCATCTTTATTACCTGGGGCTAATAATAATCCCAAGCCCAACAATGAAGAGAACACAAAAGAAAAATCTTCTGATTCGAGAAGTGATCTCTCTTGCAACTTTTGCAAGAGACGGTTTTCTTCTTCGCAAGCTTTAGGAGGGCACCAAAATGCTCATAAGCGTGAACGCGCACTTGCAAAGCATTGTCATGAGATTCAAAATGGTTTTGGTACCCCTCATTATCCTTTTCCTTACTACACAAGTTATCCAAGTCTTTCTTCATCTTATTATGGAATTGGATCTTATAACAAAGCACTTGGAATTAAGATGAACTCCATGATTCAAAAGCCAAACTATTCGTGGACGCCACCTCCTTATAGGTTCGGTTCGACTCCTAAGTGGACACCAACGCAAGAGATGAGAAACTTTTCTTCACTTGATAGATTGAAGATTGAGAGTGTTAATGCAAATAATGAAAAAAGTGCACCTAATAATATGATGAAATTAGATGTTGGAGAGTCTTCCATAAATGTTGATACGAAGTCAAATTCAGACGTTGACAAGTCAACTGTGGTTGTCACGGGTAGTGATCATCATGATACGAATAAGAAAGAAGCCTCCCATTCTGAATCTACTGGGCTTGATTTGTCACTTAAGCTTTGA 900 0.4 MAATANQSSATSESISDKVCEDENNVNNNEVTMKGKEVIVSEQHQPLKTNTDLLLEFVKLSSDNSIPRSNVREQDFFTPSKDLGASSSLLPGANNNPKPNNEENTKEKSSDSRSDLSCNFCKRRFSSSQALGGHQNAHKRERALAKHCHEIQNGFGTPHYPFPYYTSYPSLSSSYYGIGSYNKALGIKMNSMIQKPNYSWTPPPYRFGSTPKWTPTQEMRNFSSLDRLKIESVNANNEKSAPNNMMKLDVGESSINVDTKSNSDVDKSTVVVTGSDHHDTNKKEASHSESTGLDLSLKL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3863 299 MobiDBLite consensus disorder prediction 71 100 - -
Tpr4g3863 299 SUPERFAMILY beta-beta-alpha zinc fingers 117 143 IPR036236 -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 255 270 - -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 255 299 - -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 1 15 - -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 1 31 - -
Tpr4g3863 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Tpr4g3863 299 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 6 299 - -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 271 289 - -
Tpr4g3863 299 MobiDBLite consensus disorder prediction 71 113 - -
Tpr4g3863 299 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Tpr4g3863 299 PANTHER ZINC FINGER PROTEIN JAGGED 6 299 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3863 Tpr-Chr4 44789842 44790741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3863 116 196 C2H2 Transcription Factor Family AT5G10970 45.882 1.91e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3863 - - cam:101494832 254.603