Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3860 ATGAAGAACAAGCAGAGGCAGAGGGTTCAGAAGCGTGTTCCATCCGTCCCTTTCATTCTGTCTGATGCATCAGTTGATTCAAAATCTATCTCTGACCAACGAAAATACCACCAAATACATACATCGATTCAACAAAAATTCACGGTAAAGGTGAAAGAGATTAATTCAGACAAAGCTACATGGAATTTTAAGGCAAAAGTTATCAGGCTTTGGGAATTTAATTTAGTTCCTATTTCTGATGTTGTCAGCGGAGGTTATGACACTGATTTTTTAGTGGATGTTATTGGTGTTTTGACTGGTGTGGGTTCTGAGCGTGAGATAACCAATCAAAATGGAAGCAGCACAAAGCTTAATGTTGTGGCCTTGGAGGCAGATGGGCATAAACTACAGTGCACTTTGTTTGGACCTTATGTTGATGAACTTAATAATTTTCTTGCTTCTGGGGATCACACCAATGCTGTTATGATTGTACAACTTGCAAAGGCAAAGACTTTTCAAGACAAGATTCATATACAAAATTGCATGAATTGCACCCGGCTGTTCTTTAACCCAAATTGTCAGGAAAGTATAATCTTGAAGGAAAGCTTGCCTGAAAGTCTAGAGAGTCCTTCTCCGATGACGCTTACCCAAATCACTGCTGAGCCGGGAGTTAGCCCACTCGATGAGTTCCTATTCAACTCACCAAGAATCACTTTGCAAGCCATGAAAGATGCTACAAATGAATCCGTGAATGTTGTCTGTGCAACTGTCAAAAGGATCTTGAACCCTGAATGCTTCTGGTACACTGCTTGTGTTTGTAACAAATCTGTTATTCCAGATTCAAACATGTTTTTTTGCGACAAATGCAATAAGCATGTGTTGAAGGTGATACCTAGGTATTGCATGAAGGTTAGGGTTATTGATCAGACGGATTCTGCCACATTTGTGATATTTGACAAAGATGCAAGCTCTTTGTTCCAAATGAGCTGTGCTGATATGTTAGATGACATCCAAAGGGTTGCTGGTGTTGGAGGGGTGCCATCTCAATTAACTAGCCTGATTGATAAGACTTGGTTGTTTAAAGTGGAGACTAAACCTTCAAATAATCCCAGATTTGAACAGACATTTAAAGTCAGAAAGATCTGCACCGATGCTAACATAATCAAGCAATTTAAAGACAAGTGGGATCATGAGGAAGCTTCAATTAGCAAGCTAAACAATGAGGTTGGTTCCTTGAGTACTTTGATTGGCAAAGGGAAGGATGTATTAGTTTGTGGTTCTACTAATATCTTATCTGAGGATTCACTGTCATTGAATGAAAGTAACTCCAAGGACCAAGGAAAGTCAATTATTTGTGATAATACTCCTATTGCATGTACCCAAGATTTAATGTGTAAATTTTCTTCTACTGTTGTGGACCTTGACGATCCTTCTCTTGACTCTTTTATTTGCAACAAAGATGGTGGTGATATAAAGAAAAGTGATATGTCTTCAAAGCTTTCAATTGCTGCAAGTAGTCTAGAGGGAGGAGGAAAGGACATAGTTGTTGAGGCGGTTGATCTTCAAAAATCCGTTGGAACAACGACCAAAGAAGAAGCTGTTGGAAAAACTTATAGTGGAGTTGTTCATAAAGATGAATTTGTGGCCAACAAAAACATCAAGGAAGAGAAAACATTGGCTGGATGTGGAGAAATGGCAAAAGGCATGGTCATTGAGGGTAGTTCTGTTGGAAAAATTCAACAAATTAAGGGAATGACAAGATCTGATGTTGTCAATCTTGATGAAGATATTCATGAGTCTGGTTCTAGCATGGTAATAGCTCTTAATCAAATTGGTTCAACTGACATTAAAGCAATCAAGGGAAAAAAAATAAGCAAGAGAATTTCTCCTGAAAAGCAAGATGAAGATGACAATGCACCTATCAAGCTTTTGAAAAGAGCAATCAAAATTGAAAAGATTACTTAG 1944 0.3832 MKNKQRQRVQKRVPSVPFILSDASVDSKSISDQRKYHQIHTSIQQKFTVKVKEINSDKATWNFKAKVIRLWEFNLVPISDVVSGGYDTDFLVDVIGVLTGVGSEREITNQNGSSTKLNVVALEADGHKLQCTLFGPYVDELNNFLASGDHTNAVMIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCQESIILKESLPESLESPSPMTLTQITAEPGVSPLDEFLFNSPRITLQAMKDATNESVNVVCATVKRILNPECFWYTACVCNKSVIPDSNMFFCDKCNKHVLKVIPRYCMKVRVIDQTDSATFVIFDKDASSLFQMSCADMLDDIQRVAGVGGVPSQLTSLIDKTWLFKVETKPSNNPRFEQTFKVRKICTDANIIKQFKDKWDHEEASISKLNNEVGSLSTLIGKGKDVLVCGSTNILSEDSLSLNESNSKDQGKSIICDNTPIACTQDLMCKFSSTVVDLDDPSLDSFICNKDGGDIKKSDMSSKLSIAASSLEGGGKDIVVEAVDLQKSVGTTTKEEAVGKTYSGVVHKDEFVANKNIKEEKTLAGCGEMAKGMVIEGSSVGKIQQIKGMTRSDVVNLDEDIHESGSSMVIALNQIGSTDIKAIKGKKISKRISPEKQDEDDNAPIKLLKRAIKIEKIT* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3860 647 CDD RPA1_DBD_B_like 93 188 - -
Tpr4g3860 647 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 327 - -
Tpr4g3860 647 Pfam Replication factor-A C terminal domain 248 358 IPR013955 -
Tpr4g3860 647 PANTHER REPLICATION FACTOR A 1, RFA1 30 327 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g3860 647 SUPERFAMILY Nucleic acid-binding proteins 73 199 IPR012340 -
Tpr4g3860 647 Gene3D - 225 385 IPR012340 -
Tpr4g3860 647 SUPERFAMILY Nucleic acid-binding proteins 240 380 IPR012340 -
Tpr4g3860 647 CDD RPA1_DBD_C 246 374 IPR013955 -
Tpr4g3860 647 Gene3D - 68 202 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3860 Tpr-Chr4 44758221 44762316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3860 72 323 Core DNA Replication Machinery Family AT2G06510 25.660 1.03e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3860 - - mtr:MTR_4g036240 452.595