Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3858 ATGAAAATCTTTTATGATGGAGAAGTGATTGTGCTTGATGATATTTCAGATGAAAAAGCCAAGGACATCATGGTCTTTTCTACCAACAACTATGCTGCTTTTATTTGGATGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGAATAGGGCACCATATCAAACAACTTATCCAGCAACAACCATTAATAAGACAATTGATAAATCCATGGCATGGCTCTCCCTTACACCATAA 237 0.3671 MKIFYDGEVIVLDDISDEKAKDIMVFSTNNYAAFIWMKASLHRFLEKRKNRAPYQTTYPATTINKTIDKSMAWLSLTP* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3858 78 ProSiteProfiles Tify domain profile. 1 29 IPR010399 -
Tpr4g3858 78 Pfam tify domain 3 24 IPR010399 -
Tpr4g3858 78 Pfam Jas motif 38 52 IPR018467 -
Tpr4g3858 78 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 30 IPR040390 -
Tpr4g3858 78 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 76 IPR040390 -
Tpr4g3858 78 PANTHER PROTEIN TIFY 10A 1 30 - -
Tpr4g3858 78 PANTHER PROTEIN TIFY 10A 35 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3858 Tpr-Chr4 44727457 44728514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3858 1 76 Tify Gene Family AT1G19180 31.707 1.98e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tpr4g3858 tify 8.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3858 K13464 - sspl:121786305 57.7658