Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr4g3831 | ATGATAGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACAATGAGATGTGCAGATTTTATAGTTAAAGAACCGATGGTTATTGGTCACGAGTGTGCTGGGATCATAGAAGAAGTCGGTAGTCAGATACAGACTTTGGTGCCTGGTGACCGTGTGGCAATCGAGCCTGGGATTAGTTGTTGGCCTTGTGACCATTGCAAACTTGGTCGATATAATCTTTGCCCTGAGATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCTTGGCTAATCAGAACATGGCTGCATGGCTTGTTGGTTTAAACACTCTCAAGATTCAACCTTTCAATCTTCCTTCTCTTGGACCACATGATATCAGAATTAGAATGAAAGCTGTTGGAATCTGTGGGAGTGATGTTTACTACCTCAAGACAATGAGATGTGCAGATTTTAAAGTTAAAGAACCAATGGTTATTGGTCACGAGTGTGCTGGGATCATAGAAGAAGTCGGTAGTCAGGTACAGACTTTGGTGCCTGGTGATCGTGTGGCGATCGAGCCTGGGATCAGTTGTTGGCGATGTGACCATTGCAAACTTGGTCGATATAATCTTTGCGCTGAGATGAAGTTTTTTGCTACTCCACCAGTTCATGGGTCCTTGGCTAATCAGATAGTACATCCAGCAGACCTATGTTTTAAATTACCAGACAACGTGAGTTTGGAGGAAGGGGCAATGTGTGAACCATTAAGTGTCAGCGTTCATGCGTGTAGGCGAGCTAGTATCAGACCAGAAACAAATGTGTTGATTATGGGAGAAGGACCTATCGGACTTGTTACAATGCTTTCAGCTCGCGCTTTTGGTGCACCTAGGATTGTCGTTGTGGATGTGGACGACCATCGTTTATCTGTTGCAAAAAGTCTCGGTGCAGATGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAGCTGAAGAAGTTAAGCAGATTCATAATGTTATGGGAGCTGGTGTAGATGTTACCTTTGATTGTGCTGGTTTTAACAAAACCATGACTACAGAATTAAATGTTACTCAACCAGGTGGCAAAGTTTGTCTACTTGGAATGGGACATTCTGAAATGACTGTGCCACTCACACCAGCTGCTGCAAGGTAA | 1137 | 0.4327 | MIAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSQIQTLVPGDRVAIEPGISCWPCDHCKLGRYNLCPEMKFFATPPVHGSLANQNMAAWLVGLNTLKIQPFNLPSLGPHDIRIRMKAVGICGSDVYYLKTMRCADFKVKEPMVIGHECAGIIEEVGSQVQTLVPGDRVAIEPGISCWRCDHCKLGRYNLCAEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVSVHACRRASIRPETNVLIMGEGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVAEEVKQIHNVMGAGVDVTFDCAGFNKTMTTELNVTQPGGKVCLLGMGHSEMTVPLTPAAAR* | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr4g3831 | 378 | Gene3D | - | 1 | 97 | - | - | |
| Tpr4g3831 | 378 | Pfam | Zinc-binding dehydrogenase | 269 | 374 | IPR013149 | - | |
| Tpr4g3831 | 378 | Pfam | Alcohol dehydrogenase GroES-like domain | 3 | 94 | IPR013154 | - | |
| Tpr4g3831 | 378 | Pfam | Alcohol dehydrogenase GroES-like domain | 118 | 229 | IPR013154 | - | |
| Tpr4g3831 | 378 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 232 | 374 | IPR036291 | - | |
| Tpr4g3831 | 378 | CDD | sorbitol_DH | 97 | 378 | IPR045306 | GO:0016616 | |
| Tpr4g3831 | 378 | SMART | PKS_ER_names_mod | 102 | 360 | IPR020843 | GO:0016491 | |
| Tpr4g3831 | 378 | SUPERFAMILY | GroES-like | 2 | 93 | IPR011032 | - | |
| Tpr4g3831 | 378 | SUPERFAMILY | GroES-like | 95 | 265 | IPR011032 | - | |
| Tpr4g3831 | 378 | PANTHER | L-IDONATE 5-DEHYDROGENASE | 3 | 94 | - | - | |
| Tpr4g3831 | 378 | PANTHER | L-IDONATE 5-DEHYDROGENASE | 94 | 378 | - | - | |
| Tpr4g3831 | 378 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 31 | 45 | IPR002328 | GO:0008270|GO:0016491 | |
| Tpr4g3831 | 378 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 155 | 169 | IPR002328 | GO:0008270|GO:0016491 | |
| Tpr4g3831 | 378 | Gene3D | - | 106 | 245 | - | - | |
| Tpr4g3831 | 378 | PANTHER | SORBITOL DEHYDROGENASE | 3 | 94 | - | - | |
| Tpr4g3831 | 378 | PANTHER | SORBITOL DEHYDROGENASE | 94 | 378 | - | - | |
| Tpr4g3831 | 378 | Gene3D | - | 246 | 377 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr4g3831 | Tpr-Chr4 | 44329494 | 44358690 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr4g3831 | 5 | 98 | Monolignol Biosynthesis Gene Families | AT4G37980 | 31.683 | 6.39e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr4g3831 | K00008 | - | gmx:100820630 | 525.013 |