Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3820 ATGGACGAAGATTTCGACATTCCGGCGGTTGATGAAATGAACGAAGATTTCGACTTCGCCGGCGCCGATGGCAATCCAATTCTCAAGGTCGGCGAAGAGAAGGAGATCGGTAAGCAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGATGGTTGGGAGACTCCTGATGTTGGCGATGAAGTTTATGTTCACTATACTGGAACGTTGCTTGATGGTACTAAATTTGATTCTAGCAGAGATAGGGGAACACCTTTCAACTTTAAGCTTGGACAAGGGCAAGTTATCAAAGGATGGGATGATGGTATTAAAACCATGAAGAAAGGTGAAAATGCTCTTTTCACCATACCACCTGAGTTAGCTTATGGTGAATCTGGTTCTCCACCTACTATTCCTCCCAATGCTACTCTACAATTTGATGTTGAGCTGCTGTATTGGACTAGTGTGAAGGATATATGTAAGGATGGGGGGTTGTTTAAGAAGATAGTTAAGGAGGGGGAGAAATGGGAAAACCCCAAGGATCCTGATGAAGTCCTTGTTAAGTATGAAGCACGTCTTGATGATGGAACGCTTGTGGCAAAATCTGACGGGGTGGAGTTCACTGTGAAGGAGGGTTATTTCTGCCCTGCATTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGAAAGTGATCTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGCAAGCCAGCTCATGGTGATGAAGGTGCAGTTCCACCTAATGCAACATTGCAAATTACTCTTGAGTTAGTTTCTTGGAAGACTGTTTCTGAAGTAACCGATGATAAGAAGGTCATCAAAAAGATCCTCAAGGAAGGAGAAGGATATGAGCGACCAAATGAGGGAGCTGTCGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGCACTGTATTTTTGAAGAAAGGCCATGGCGATGACGAAACAGATCTCTTTGAATTTAAAACGGACGAGGAGCAAGTGATTGATGGGCTTGATAGAGCTGTAATTACCATGAAGAAGGGTGAGGTAGCATTGTTGACTATTGCTCCTGAGTATGGTTTTGGTTCATCAGAGTCTCAGCAGGAATTGGCCGTGGTTCCTCCTAATTCAACCTTGCATTATGAAGTTGAGCTGGTTTCATTCGTAAAGGATAAGGAGTCCTGGGACATGAACACTGGTGAGAAGGTAGAAGCTGCTGGTAAGATGAAAGAAGATGGGAATAGGTTGTTTAAAGCTGGGAAATACACAAAAGCTTCTAAAAGATATGAGAAGGCTGTAAAGTTCATAGAGTATGATACTTCCTATACCGAAGAGCAGAAGAAAACTGCCAAGGCCTTGAAGGTTGCTTGTAATCTGAACAATGCAGCATGTAAGCTGAAATTGAAAGACTATAAACAAGCAGAGAAATTGTGTACAAAGGTGCTGGAGCTTGAGAGCACAAATGTGAAGGCCCTCTATAGGAGGGCTCAGGCTTACATTCAATTGGCTGACTTGGATTTGGCTGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGAGGTGAAGCTGGAGTACAAGATTTTGAAGGAAAAGATGAAGGAGATCAACAAGAAGGACGCCCAATTTTATGGGAATATGTTTAGCAAAATGAAAAAGTTGGATTCCCTTGACGTTAATAAATCGGCGCCAAAGGATGCTGAACCCATGAGTATTGACAGCAAGGCATAG 1728 0.4277 MDEDFDIPAVDEMNEDFDFAGADGNPILKVGEEKEIGKQGLKKKLLKEGDGWETPDVGDEVYVHYTGTLLDGTKFDSSRDRGTPFNFKLGQGQVIKGWDDGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLYWTSVKDICKDGGLFKKIVKEGEKWENPKDPDEVLVKYEARLDDGTLVAKSDGVEFTVKEGYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKLQDGTVFLKKGHGDDETDLFEFKTDEEQVIDGLDRAVITMKKGEVALLTIAPEYGFGSSESQQELAVVPPNSTLHYEVELVSFVKDKESWDMNTGEKVEAAGKMKEDGNRLFKAGKYTKASKRYEKAVKFIEYDTSYTEEQKKTAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNREVKLEYKILKEKMKEINKKDAQFYGNMFSKMKKLDSLDVNKSAPKDAEPMSIDSKA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3820 575 Gene3D Tetratricopeptide repeat domain 388 545 IPR011990 GO:0005515
Tpr4g3820 575 Gene3D - 264 387 IPR046357 GO:0003755
Tpr4g3820 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Tpr4g3820 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Tpr4g3820 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Tpr4g3820 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 263 IPR001179 GO:0003755
Tpr4g3820 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 385 IPR001179 GO:0003755
Tpr4g3820 575 SUPERFAMILY FKBP-like 147 266 - -
Tpr4g3820 575 PANTHER PEPTIDYLPROLYL ISOMERASE 1 270 - -
Tpr4g3820 575 PANTHER PEPTIDYLPROLYL ISOMERASE 385 555 - -
Tpr4g3820 575 PANTHER PEPTIDYLPROLYL ISOMERASE 272 384 - -
Tpr4g3820 575 Pfam Tetratricopeptide repeat 485 518 IPR001440 GO:0005515
Tpr4g3820 575 Gene3D - 31 148 IPR046357 GO:0003755
Tpr4g3820 575 SUPERFAMILY FKBP-like 267 401 - -
Tpr4g3820 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Tpr4g3820 575 SUPERFAMILY FKBP-like 35 150 - -
Tpr4g3820 575 SUPERFAMILY TPR-like 391 550 IPR011990 GO:0005515
Tpr4g3820 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 384 - -
Tpr4g3820 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 385 555 - -
Tpr4g3820 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 270 - -
Tpr4g3820 575 Coils Coil 518 538 - -
Tpr4g3820 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 146 IPR001179 GO:0003755
Tpr4g3820 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 260 IPR001179 GO:0003755
Tpr4g3820 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 143 IPR001179 GO:0003755
Tpr4g3820 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 285 382 IPR001179 GO:0003755
Tpr4g3820 575 Gene3D - 149 263 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3820 Tpr-Chr4 44257811 44262339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3820 1 551 Calmodulin-binding Proteins AT3G25230 81.125 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3820 K09571 - gmx:100794411 982.245