Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3819 ATGGGTATTTCTAGGGATTCTATGCACAAGAGGCGTGAAACTGGTGGAAAGAAGAAATCATGGAGGAAGAAGCGAAAGTATGAGCTCGGTCGCCAGCCAGCTAACACCAAGCTATCAAGCAACAAAACTGTGAGGAGGATCCGTGTTAGAGGAGGAAATGTGAAGTGGAGAGCCTTGAGATTGGATACTGGAAACTTTTCTTGGGGAAGTGAAGCTGTCACCCGCAAAACCCGTTTGCTTGATGTTGTGTACAATGCTTCCAACAATGAACTTGTCCGTACTCAGACCCTTGTGAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACATTATGGTGTTGAAATTGGAAGGAAGAAGAAAAATGCTGGCAAGAAAGAGTCAGAGGAGGCTGAAGTTGTTGCAGAAGAAGTCCACAAGAGTGCTCATGTTCAGAGAAAATTAGAGCAACGCCAGAAAGATCGCCAGCTTGATCCACACATTGAAGAGCAGTTTGGTGGTGGAAGATTGCTTGCTTGCATTTCTTCTCGACCTGGTCAATGCGGCAGGGCTGATGGCTACATTCTGGAAGGTAAGGAGCTTGAGTTCTACATGAAGAAGCTCCAGAAGAAGAAGGGCAAGGGTGCAGCATAA 651 0.4624 MGISRDSMHKRRETGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKNAGKKESEEAEVVAEEVHKSAHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3819 216 Gene3D Ribosomal protein S8e, subdomain 108 174 IPR042563 -
Tpr4g3819 216 Gene3D - 26 211 - -
Tpr4g3819 216 Pfam Ribosomal protein S8e 5 195 IPR022309 -
Tpr4g3819 216 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Tpr4g3819 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 - -
Tpr4g3819 216 CDD Ribosomal_S8e_like 5 195 - -
Tpr4g3819 216 TIGRFAM eS8: ribosomal protein eS8 1 197 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tpr4g3819 216 MobiDBLite consensus disorder prediction 1 37 - -
Tpr4g3819 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3819 Tpr-Chr4 44252311 44254236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3819 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.314 6.06e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3819 K02995 - gmx:100794937 358.992