Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3817 ATGGAAAACCAATTTTTTATGAATGTTGGTTTTGAACCTTCACCTCATTCTTCAATGCCAACATGGCAAACAATTTCCTCAACCATGGAAATTCAACAAACATCATTGAATTGTTCAATTGACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCTTCCCCTGCAGCTACATCATCATCACCACAAAATCCCAACAAAATTTCCAATGAAAATTTTGTGATGAGAGAATTACTAGGAAAATTAGGTACTTTTGGTGAGATCTCACAACATTCTAATCTCAACAACAACATTGTACCAATGATGAACTCATCTGTTCCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCATGCTTTGGTAGCAAAAGTTTCAATGAAAGAAGTAATCAACATGTGATGATGAACAATGTTGATTTACCTCAAAGATCTGTTAATTTACTACCAAGAGTTTCAAGTAGTCCTTCACTGAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAGAATTGAAGTGACTAATTCACAAGAGGAATCTACAATTTCTGAGCAAAATACACCAAATGGTGAAATGGGTGTTAAAGCTTCACTTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTACCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGCAAGTCAAATGAAGGTGAAAGAAATGAAAATGGTGGCATGAATATGGAGGAAGAGTCCAAAGAAGGTAAAAATGATGCAGGGGAAGAGAAACAGAATAAGAGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTGTTCGGAGGGAGAAAATAAGCGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCCTCATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAACTATTGCTACTACAAATGGGACACACTGCTCAGTGGACCCATTGGACTCTTCTTTGTGCATAAATCTACCTTCCCTAAATGGATTTAATGAAGGTGCCTCTCAGTATCCATTAACATTCTCTGAGGAGGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCCCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAGCTCTAA 1554 0.361 MENQFFMNVGFEPSPHSSMPTWQTISSTMEIQQTSLNCSIDQTQDCFFNPNWDNKSTDQNLNFDSALSSIVSSPAATSSSPQNPNKISNENFVMRELLGKLGTFGEISQHSNLNNNIVPMMNSSVPEFSADPGFVQRAAKFSCFGSKSFNERSNQHVMMNNVDLPQRSVNLLPRVSSSPSLKNFGSQMGYKENKNSPLQQENERIEVTNSQEESTISEQNTPNGEMGVKASLDMNSRKRKASSSKGKASNFTNPTTKGVEGSGEDSNAKKSKSNEGERNENGGMNMEEESKEGKNDAGEEKQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDIFQSNNSLQNSIFQLDSSSPSFYGQQPQQNQTIATTNGTHCSVDPLDSSLCINLPSLNGFNEGASQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3817 517 SMART finulus 331 381 IPR011598 GO:0046983
Tpr4g3817 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 394 IPR036638 GO:0046983
Tpr4g3817 517 Gene3D - 322 397 IPR036638 GO:0046983
Tpr4g3817 517 MobiDBLite consensus disorder prediction 178 226 - -
Tpr4g3817 517 MobiDBLite consensus disorder prediction 245 262 - -
Tpr4g3817 517 CDD bHLH_AtBPE_like 315 400 - -
Tpr4g3817 517 PANTHER BHLH TRANSCRIPTION FACTOR 3 111 - -
Tpr4g3817 517 PANTHER BHLH TRANSCRIPTION FACTOR 120 510 - -
Tpr4g3817 517 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 510 IPR024097 GO:0006355
Tpr4g3817 517 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 111 IPR024097 GO:0006355
Tpr4g3817 517 MobiDBLite consensus disorder prediction 178 315 - -
Tpr4g3817 517 Pfam Helix-loop-helix DNA-binding domain 329 376 IPR011598 GO:0046983
Tpr4g3817 517 MobiDBLite consensus disorder prediction 263 315 - -
Tpr4g3817 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 375 IPR011598 GO:0046983
Tpr4g3817 517 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3817 Tpr-Chr4 44220660 44224667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3817 1 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.744 7.17e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g3817 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3817 - - gmx:100801233 585.489