Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3809 ATGTCTTCTTCTTCATCCTCCAACCCTCAATGGATCTACGATGTGTTCATCAACTTCAGAGGGAAAGACACGCGTAAGACTTTCATTTCTCATCTCGATGCTACCCTCACAAATGCCGGAATCAACACTTACATTGATCAACAGCTTCACAAGGGAACTGAGCTAGCTTGGACCACAGCTATTAAGAGCAAAATAGAAAAGTCTCATATATCTATCCTTGTTTTCTCCAAAAACTACACTCAATCTAGTTGGTGTCTTCAAGAGCTCGAAAAAGTCATGGAATGTCATAGAACTCATGGCCAGGTTGTTGTCCCTGTGTTTTATGATGTTGATCCAACGGTTGTGCGCCATCAGAAGGGTGGTTTTGGACAAAAGTTGAGAGCTACTGCAAAAAGAATATACTCTCGCAAAGGAAGAGAGAGGATGGAATATGTGCTGTCAAATTGGAGAACTGCACTCACCCAAGCTGCTACACTTGTGTTTTATAACTATTACAATTCAAGGAGTGAAGGGGAACTATTGCAGCAAATTGTTGAAGATGTTTTGGCAAAACTAGACAACACATTCTTGTCTATTACCAAATTTCCAGCTGGTTTGGAACCCCGTGTGCGAAAAGTGACTGATTTTATTGAAAATCAATCAAAAAACGTTTGCATGATAGGGATATGGGGAATGGGAGGATCCGGAAAAACAACCCTAGCTAAAGCTATCTACAATCGAATTCATCAAAAATTTGTCGACAGAAGTTTTGTTGAAAATGTTAGAGAAGTATGTGAAAAGGAAAATAGAGGGATTATTCATTTACAACAACAACTTCTTTCAGATATCCTGAACACAAAGGAGAAGATACATAGCATCGCGTTAGGAACAACAAAGATAGAGAAAAGGTTTCGTGGGAAAAAGGCACTCATTGTACTTGATGATGTGACCACATTTGAACAGTTAAAATCATTATGTGGAAATCCTAAACTGTTTTGTCCGGGAAGTGTGTTAATTGTTACTACTAGAGATGTACACCTACTTAATTTATTCAAGGTTGATTATGTGTGTACAATGAAGGAAATGGACGGAAACGAGTCCCTTGAGCTTTTCTGTTGGCATGCTTTTAGACAGCCTAGTCCAATCGAAGAGTTTCATGAACTCTCAAGGAACGTAGTTGCTTATTGTGGAGGATTACCAGTTGCTCTTGAAGTACTTGGTTCTTTCTTATTTGAGAGGACAAAAGAAGAATGGATGAGTGTACTCTCAAAACTAAAGAAAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGTTATGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATCAACAAGGACAGAGCCGATGTTACACAGATACTAAATGGTTGTGGACTTTATGCAGATATTGGAATAACAGTCCTTGTAGAGCGGAGCCTTGTCAAAATTGAAAAGAATAACAAGCTAGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCACCAAGAAAGCTTGGGAAGCATAGTAGATTGTGGTTTCGTGAGGATGTACACGATGTTTTGACAAAACATACTGGTACAGAAACTGTAGAGGGATTGGTTTTGAAGGTGGAAAGAACTTGTAGAATTCATTTAAGTGCCGATTGTTTCAAGGATATGAAGAAATTGAGACTTTTGCAACTAGATCAAGCCGTCCTCACTGGAGATTATCGGTATCTTTCCAGAGAACTGAGATGGATTCATTGGCAAGGATTTACCTTCAACTATATACCCGATGACTTTTATCAAGGAAATCTAGTTGTTATTGATGTAAAATACAGTAGTATCAAACAACTGTGGAGGGAAACCAAGTTGTTGGATAAACTAAAAATTCTTAATGTCAGTCATTCTAGATACTTGAAAAACACACCTGATTTTTCAAAATTACCGAATCTAGAAAAGCTTATTATGAAGAATTGTCCAAGTTTATCTGAGATACACCATTCCATTGGAGATCTCAAGAATCTACTTCTGTTGAATTTGAAGGACTGTACAAGTCTTAGCAATCTCCCAAGGGAGGTTTATCAATTGAAATCTTTGAAAACTCTTGTACTTTCTGGTTGTTCTAATATTGACAAGTTGGAAGAAGACATGGAGCAGATGGAATCCTTGACAACACTGATTGCAAAAGATACATCTGTAAAAGAAGTTCCCTATTCAATACTAAGATTAGAAAGTATTGGATTTATATCCCTATGTGGATATGAAGGATTATCGCATGATGTTTTTCCTTCTCTTATTAGGTCTTGGATGACACCAACTATGAACCCCCTACCCTGTACATCCCCATTCGAGGGAAGTTCATTGTCACTAGTTTCGTTGGATGTAAGGAGTAATAATATGGGCTATAAATCAACGATGCTTAGAAACCTTTCAAAACTTCGAAGTGTTTGGGTTCATTGCCACTCAGAGATTCAACTAACTCAAGAATTAAGAAAAATTGTTGATGATCTATACAATGTAAATTTTATTGAGTTGGAAACAACATCACATAGACCTCAAATCTCAAATCCGTCTTTTAAATCACTTTTGATGGGAATGGGAAGTTTCGAACTAGTCATCGACACTCTTGGCAAGAGCATATCACAGGGATTGATAACAAATTGTTCTAGTAACTTCTGTCTTCCGGGTGACAATTATCCTTCTTGGTTAGCTTATAAAGGTGAAGGATCTTCCGTACTATTTCAAGTTCCCGAGGATAGTGATTGTGGCATGAAAGGAATAATCTTATGTGTTGTTTATTCATCAACATCTGAAAACATGGCAGCTAAATATCTCACCAGTGTCTTGATTATTAATTACACAAAATGCACCATCATATACAAGCGAGACACAGTTATGTCTTTTAACGATGAGGATTGGAAGGGTTTAACATCAAATTTAGAGCCTGGTGACAATGTGGAGATTTTTGTAGCTTTCGGTCGTGGACTGATTGTTAAGGCCACAGCTGCCTATCTAATATATGGCCATTCAGTTAATATTGAAACTGAGCCAACAGTTAACATGGAAATGGAGCCATCACAGGAAGATAACTTGCAGCAATCTCCTGATGTGAAAATAGAGCTATCACCGAATGCGAAAAAGGAACCATCACCAAAGCCAAATAAAGATATCTTTACAAGACTTGCAAAGAGAACTAGACAGTGTTTGTGCTTGAACTGA 3231 0.3736 MSSSSSSNPQWIYDVFINFRGKDTRKTFISHLDATLTNAGINTYIDQQLHKGTELAWTTAIKSKIEKSHISILVFSKNYTQSSWCLQELEKVMECHRTHGQVVVPVFYDVDPTVVRHQKGGFGQKLRATAKRIYSRKGRERMEYVLSNWRTALTQAATLVFYNYYNSRSEGELLQQIVEDVLAKLDNTFLSITKFPAGLEPRVRKVTDFIENQSKNVCMIGIWGMGGSGKTTLAKAIYNRIHQKFVDRSFVENVREVCEKENRGIIHLQQQLLSDILNTKEKIHSIALGTTKIEKRFRGKKALIVLDDVTTFEQLKSLCGNPKLFCPGSVLIVTTRDVHLLNLFKVDYVCTMKEMDGNESLELFCWHAFRQPSPIEEFHELSRNVVAYCGGLPVALEVLGSFLFERTKEEWMSVLSKLKKIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFINKDRADVTQILNGCGLYADIGITVLVERSLVKIEKNNKLGMHDLIRDMGREIVRQSSPRKLGKHSRLWFREDVHDVLTKHTGTETVEGLVLKVERTCRIHLSADCFKDMKKLRLLQLDQAVLTGDYRYLSRELRWIHWQGFTFNYIPDDFYQGNLVVIDVKYSSIKQLWRETKLLDKLKILNVSHSRYLKNTPDFSKLPNLEKLIMKNCPSLSEIHHSIGDLKNLLLLNLKDCTSLSNLPREVYQLKSLKTLVLSGCSNIDKLEEDMEQMESLTTLIAKDTSVKEVPYSILRLESIGFISLCGYEGLSHDVFPSLIRSWMTPTMNPLPCTSPFEGSSLSLVSLDVRSNNMGYKSTMLRNLSKLRSVWVHCHSEIQLTQELRKIVDDLYNVNFIELETTSHRPQISNPSFKSLLMGMGSFELVIDTLGKSISQGLITNCSSNFCLPGDNYPSWLAYKGEGSSVLFQVPEDSDCGMKGIILCVVYSSTSENMAAKYLTSVLIINYTKCTIIYKRDTVMSFNDEDWKGLTSNLEPGDNVEIFVAFGRGLIVKATAAYLIYGHSVNIETEPTVNMEMEPSQEDNLQQSPDVKIELSPNAKKEPSPKPNKDIFTRLAKRTRQCLCLN* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3809 1076 Pfam NB-ARC domain 202 428 IPR002182 GO:0043531
Tpr4g3809 1076 PRINTS Disease resistance protein signature 219 234 - -
Tpr4g3809 1076 PRINTS Disease resistance protein signature 296 310 - -
Tpr4g3809 1076 PRINTS Disease resistance protein signature 389 403 - -
Tpr4g3809 1076 PRINTS Disease resistance protein signature 698 714 - -
Tpr4g3809 1076 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 1011 IPR044974 GO:0006952
Tpr4g3809 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
Tpr4g3809 1076 MobiDBLite consensus disorder prediction 1025 1060 - -
Tpr4g3809 1076 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 158 IPR035897 -
Tpr4g3809 1076 Gene3D - 193 348 IPR027417 -
Tpr4g3809 1076 MobiDBLite consensus disorder prediction 1025 1043 - -
Tpr4g3809 1076 SUPERFAMILY L domain-like 545 893 - -
Tpr4g3809 1076 ProSiteProfiles TIR domain profile. 11 185 IPR000157 GO:0007165
Tpr4g3809 1076 Gene3D - 7 192 IPR035897 -
Tpr4g3809 1076 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Tpr4g3809 1076 Pfam TIR domain 13 193 IPR000157 GO:0007165
Tpr4g3809 1076 MobiDBLite consensus disorder prediction 1045 1060 - -
Tpr4g3809 1076 Gene3D - 355 438 IPR042197 -
Tpr4g3809 1076 SMART till_3 12 159 IPR000157 GO:0007165
Tpr4g3809 1076 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 1011 - -
Tpr4g3809 1076 Gene3D Ribonuclease Inhibitor 529 874 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3809 Tpr-Chr4 44087312 44097178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3809 629 750 WRKY Transcription Factor Family AT4G12020 36.885 4.78e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3809 - - mtr:MTR_8g011850 1342.41