Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3800 ATGTCTTCATCATCATCATCATCATCCACTTCTCAATGGATCTACGATGTTTTCCTCAGCTTCAGAGGGGAAGAGACTCGTCGTAACTTCGTTTCTCATCTCCACAGCGCCCTCTCAAATGCCGGAATCAACACTTACATCGACGACCGGCTTCAAAGAGGAACAGAGCTAGAACCAGAACTAATGCTAGCAATAGAAAGTTCTCGTATTTCAATAATTGTTTTCTCCAAAACCTATGCTGAATCTAGTTGGTGTCTTAAAGAGCTTGAACAAATCATGAAATGCCGCAGAAATTGTGGTCAGGTTGTTGTGCCAATATTTCACGACGTTGATCCATCAGCTTTGCGTCATCAGACGGGTTCTTATGGAATTGCTTTGCAAACTACTTCAAAAAGAAGATCATCAGCAGCGGAAATGATGGAGGATGAATTTTCCAATTGGAATAGTACACTAACTGAAGCTGCAAATATATCTGGCTGGCATGACAAAAATTTCAAGAATGAAGCTGAACTGATTTCTCAAATTGTTGGCGACGTTAAGAGAAAACTAGACAAAAGATTATTGAATATTACCGAATATCCGGTTGGATTGGATGCCCCTGTTCAACAAGTGATTCAGTTTATTGAAAATCAATCAAACAAAGTTTGCTTGATAGGGATCTGGGGGATGGGTGGATCGGGTAAAACAACGCTAGCCAGAGCTATCTACAACAAATTTTATTGCAAATTTGTGGATCACAGTTTCATTGAGAAAATTAGAGAAGTTTGTAATAGAGGTGATGAAGAGATTATTCATTTACAAGAACAACTTCTTTCAAATCTCTTGAAAACAAATGAGAAGATATATAATGCTGCATCTGGTAAAGCCACACTTAAGAACATATTTAAGGTGAAAAAGGCACTCATTGTACTCGATGACGTGAGCACATCCGAGCAAGTGGAAACCCTATGTGGAAATCGTAAATATTTTGTTTCGGGAAGTGTATTGATTGTTACATCCAGAGATGTACACATACTTAAGAAACTTAAAGTTGACTATATCTATAGCATAAAGGAAATGGACGAAATCAAGTCCCTTGAGCTCTTCAGTTGGCATGCTTTTGGACAACCACGTCCGATTGAAGGCTTCAGTGAACTCTCAGAAAAGATAGTTGCTTGCTGTGGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTCCTTAAGTGAAAGGACAAGAAAAGCACACTGGACATGTACACTTTCAAAATTAAGGAGAATTCCCAATGATAGGGTGCTAAAGACACTTAAAATAAGCTATGATGGTTTAAAGGATGATTTGGTAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGCAAGGACATATCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTTTGCTGATGCTGGAATAGCTGACCTCATTGATCAGAGCCTCCTAAAAGTTGAGAAGAATAGCAAGCTCGGAATGCATGATTTGCTACGAGACATGGGAAGGGAGATTGTTAAAAGATCAACAAAAAAGCTTGGGAAGCGTAGTCGATTGTGGTTTCACGAGGATGTACGCGAGGTTTTGAATGGAAATAGTGGAACAGACTCCGTGGAAGGATTGGTTTTGAAGTCGCAAAGCAACATGAATGTTTCGTTCAAGGCTGATTCTTTCATGGAGATGAAGAAGTTGAGACTTTTACAACTTAATCATGTTGATCTTACTGGAGATTATGTGCACCTTTCTCAAAAACTGAGATGGCTCCATTGGCAGGGATTTACAGACGACTGTATACCTGACAGCTTTTATCAAAAAAATCTAGTTGTTTTTGAGTTAAAACACAGCAATATTAAACAACTTTGGAATGAAACCAAGTTGATGGAGAAGCTGAAAATTCTCAATCTCAGTTATTCCAAGCACTTGACATGCACTCCCGACTTTTCCAAATTACCGAATCTAGAAAAGCTCATTATGAAGGACTGTTCAAGCTTGTCCGAGTTACACCACTCAATTGGGGATCTCGAGAATATTCTACTGATAAATTTGAAGGACTGTACAAGTCTTAGAAATCTCCCAGAGAAGGTCTATCAGTTGAAGTCATTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGACATAGAACAGATGGAACCCTGGACAAACGGTACAGGTGTAAAAGAGATTCTATATTCAATAATAGGATTGAAAAGGATCACATATATATGTGGATGTGAATTATCATTTGAAGTTTTTCCATCTGTCAGTTGGTCACGGATGTCACCAACCGTGGAGTTTCCACCTTTTATTTCCCCATTTGATAACCACTATGATATAAATTTTAGAGAACCGGAAACATCACAAAACTCAAACCTTTCCTTGAGAAAGCTTTTGATTGGAATGGGAAGTTGCCACATTGTCACTGATAGTCTTGGCAAGAGTATACCACAGGGATTAACAACCAATGATTCGAGTGAATTTTCCCTTCTGGGTGGCAATTATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAGTACGATTTCAAGTTCCTGAGAATATTGATTGTCAAGTGAAGGGAATAATCTTATGTGTTGCTTATTCATCAACACCTAAAAACATGGTCGCTGAATGTCTTACCAATGTCTTGATCATTAATTACACAAAGTTCACCATTCACATATATAAGCGAGACACGTTAATGCCCTTTAATGGTGAAGATTGGAAGAGTGTAACATCAAATCTAGGACATGGTGACGATGTGCATATTTGTCTAGTTTTTGGGCATGGAATGATTGTTAAGGAGACAACTGTTTATCTAATTTATGGCCAGTCAGTTACTACGGAACTTGAAAAATCTATGGAAGTCGAGCCATCAACTAACATGGAAATGGAGCCAACAGAGGAAGTGAATGTGCAGCTGTCACCTGAAGTGGACATGCAACCATCACCTGATGCAAAGCTGGAGGCATCAATTACTATGGAAATTGAACATTCAATTTCTGTCCATGTCGGCAGCACCTATGGAATCAGATTTGGAAATTGA 3063 0.3872 MSSSSSSSSTSQWIYDVFLSFRGEETRRNFVSHLHSALSNAGINTYIDDRLQRGTELEPELMLAIESSRISIIVFSKTYAESSWCLKELEQIMKCRRNCGQVVVPIFHDVDPSALRHQTGSYGIALQTTSKRRSSAAEMMEDEFSNWNSTLTEAANISGWHDKNFKNEAELISQIVGDVKRKLDKRLLNITEYPVGLDAPVQQVIQFIENQSNKVCLIGIWGMGGSGKTTLARAIYNKFYCKFVDHSFIEKIREVCNRGDEEIIHLQEQLLSNLLKTNEKIYNAASGKATLKNIFKVKKALIVLDDVSTSEQVETLCGNRKYFVSGSVLIVTSRDVHILKKLKVDYIYSIKEMDEIKSLELFSWHAFGQPRPIEGFSELSEKIVACCGGLPLALEVIGSSLSERTRKAHWTCTLSKLRRIPNDRVLKTLKISYDGLKDDLVKDIFLDICCFFIGKDISYVTEILNGCGLFADAGIADLIDQSLLKVEKNSKLGMHDLLRDMGREIVKRSTKKLGKRSRLWFHEDVREVLNGNSGTDSVEGLVLKSQSNMNVSFKADSFMEMKKLRLLQLNHVDLTGDYVHLSQKLRWLHWQGFTDDCIPDSFYQKNLVVFELKHSNIKQLWNETKLMEKLKILNLSYSKHLTCTPDFSKLPNLEKLIMKDCSSLSELHHSIGDLENILLINLKDCTSLRNLPEKVYQLKSLKTLILSGCSKIDKLEEDIEQMEPWTNGTGVKEILYSIIGLKRITYICGCELSFEVFPSVSWSRMSPTVEFPPFISPFDNHYDINFREPETSQNSNLSLRKLLIGMGSCHIVTDSLGKSIPQGLTTNDSSEFSLLGGNYPSWLAYTGEGPSVRFQVPENIDCQVKGIILCVAYSSTPKNMVAECLTNVLIINYTKFTIHIYKRDTLMPFNGEDWKSVTSNLGHGDDVHICLVFGHGMIVKETTVYLIYGQSVTTELEKSMEVEPSTNMEMEPTEEVNVQLSPEVDMQPSPDAKLEASITMEIEHSISVHVGSTYGIRFGN* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3800 1020 Gene3D - 12 185 IPR035897 -
Tpr4g3800 1020 Gene3D Ribonuclease Inhibitor 536 725 IPR032675 -
Tpr4g3800 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Tpr4g3800 1020 SUPERFAMILY L domain-like 543 718 - -
Tpr4g3800 1020 Gene3D - 353 437 IPR042197 -
Tpr4g3800 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 948 IPR044974 GO:0006952
Tpr4g3800 1020 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 160 IPR035897 -
Tpr4g3800 1020 Pfam TIR domain 15 186 IPR000157 GO:0007165
Tpr4g3800 1020 ProSiteProfiles TIR domain profile. 13 183 IPR000157 GO:0007165
Tpr4g3800 1020 Pfam NB-ARC domain 199 423 IPR002182 GO:0043531
Tpr4g3800 1020 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 948 - -
Tpr4g3800 1020 Gene3D - 186 347 IPR027417 -
Tpr4g3800 1020 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Tpr4g3800 1020 PRINTS Disease resistance protein signature 217 232 - -
Tpr4g3800 1020 PRINTS Disease resistance protein signature 294 308 - -
Tpr4g3800 1020 PRINTS Disease resistance protein signature 387 401 - -
Tpr4g3800 1020 PRINTS Disease resistance protein signature 696 712 - -
Tpr4g3800 1020 SMART till_3 14 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3800 Tpr-Chr4 43964601 43970039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3800 15 741 WRKY Transcription Factor Family AT4G12020 31.873 3.71e-80 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3800 - - mtr:MTR_8g037235 1303.5