Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3798 ATGGCAGCTGCGTCTTCTTCATCCTCCGATCCTCAATGGATACACGACGTGTTCATCAATTTCAGGGGGGAAGACACACGCAAGAACATCGTCTCTCATCTCTACGCCGCCCTCTCGAATGCCGGAATCAATACTTTTCTTGATGACGAGAATCTTAGAAGGGGAATGGAGCTGGGACCAGAACTACGGCAAGCAATAGAAGGTTCTCGTATTTCCATAGTTGTCTTCTCCAAAACTTATACCTCATCTACTTGGTGTCTTAAAGAGCTTGAACAAATCATGAAATGCCGAAGAAATCATGGCCAGATGGTTGTGCCCATCTTTTACAACGTTGACCCATCGGATTTGCGTCATCAGAAAGATGGTTTTGGAAAAGCTTTGAAATCAACTGCAAAAAAAAGATCCTTAAGTGGGGAAAGGATGGATAATCTATATTCCAAGTGGAAGAGTGTGCTAACTGAAGCTGCAACTATATCTGGTTGGCATACCAAAAATTTCGGGAATGACGCTGAACTAGTTTCTAGAACTGTTGAAGACGTTAGGAGAAAGCTAAGCAGCAGATCATTGAATATTACCGAACATCCGGTTGGATTGGATACTCGTGTGCAAGAAGTGACTCGGTTATTTGATATTCAAACAAACAAACTTTGCTTGATAGGGATCTGGGGTATGGGTGGATCGGGTAAAACAACAACAGCCAGAGCTATCTACAACAAAATTAATAGCAAATTTGTGAGTCACAGTTTCATTGAGAATATCAGAGAAGTCTGTAACAGAGGTGATCAAGGGATTATTCTTTTACAAGAACAACTTCTTTCAAATGTCCTGAAACCAAGTCAGAAAATACACAGCACGGCATCCGGGATAACCACAATTGAGAAACTATATATGGGGAAAAGGGCACTCATTGTACTTGACGATGTTAGCACATTTGAGCAAGTAGAAGCCCTATGTGGAAATCGTAAATGTTTTGGTTCGGGAAGTGTATTGATTGTTACATCTAGAGATGTAAACATACTTAAGAAACTTCAAGTTCATTATATCTATAGCATAAAGGAAATGGACGAAATCAAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAAAGAACCGAGTCCAAAAGACGACTTCAGAGAACTCTCAAGCAGCATAGTTACTTACTGTAGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTACTTACGTGCCAGGACAATAAAAGAATGGAGAAGTGTACTATTAACGTTAGAGAGAATTCCTGATAATCAAGTGCATGAAAAACTGAGAATAAGCTATGATGGTTTAAAGAAGGATACGGAAAAGGATATATTTCTTCACATATGTTGTTTCTTTATTGGTAAGGACAGAGCCTATGTTTCAGAGATTATAGACGGCTGTGACCTTTATGCTGGTATTGGAATAACTGTCCTCATAGAGCGTAGCCTCCTAAAAGTTGAAAAGAATAATAAGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTTCGTGAAAGATCAATAAAACTGCTTGGGAAGCGTTGTCGATTGTGGTTTCACGAGGATGCACATAAAGTATTGACAGAAAAATCTGGAACAGAAACTGTGGAAGGATTGGTTTTGAAGTCGCAAAGCACCAGCAATGTTTGTATCGAAACTGATACTTTCAAGGAGATGAAGAATTTGAGACTTTTACGACTTGATCACGTTGATCTTTTTGGAGCTTTTAAGTATCTTTCTAAAGAACTGAGATGGCTCCATTGGAAGCGTTTTAGTCGTGAATATATACCTGATGACTTTTATCTGGAAAATCTTGTTGTTTTTGAGTTAAAACATAGCAATATTAAACGAGTTTGGAATGAAACCAAGTTGATGGACAAGCTGAAAATTCTCAATCTCAGTCATTCCAAGTACTTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGACTGTCCACGCTTGTCTGAGGTACACCAGTCAATTGGGGATCTGAGGAATCTTCTTCTGATAAATTTGGAAGGCTGTACAAGTCTTAGCAATCTCCCAGAGAACATAAATCAATTGAAGTCTTTGACCACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAGGTTGGAAGAAGGCATAGTGCAGATGGAATCCTTGACAACACTGGTCATAAAAGGTACAGGTGTCAAAGAGGTGCCATATTCAGTGGTAAGATTGAACAGCATCGGGTATATATCTCTATGTGGATATGAAGGATTATCACAAGATGTTTTTCATTCTTTCATTCAGTCTTGGATGTCACCAACAATGAATTTTTCCCTTAATAACTTGGACTTTCTAACACCAATAGTTAGGAGCCTTCAACAACTCAGAACTGTTTGGATACAATGCCACTCAGAGAATCAACTAACTCAAGAATTAAAAATGATTTTTGATGATCAATATGATACTAATTATACTGAATCAGAAGCAATGCAAAGCCCAAATGATTTCTTGAGATCGCATTTGATTGGAATGAGAAGTCTCCCCACAGTCATGGATACTCTTGGCAAGAGAATATCACAGGGATTAACAACCACCAATGGTTCGAGCAATTTTTTCCTTCCGGGTGGCAATCATCCTTCTTGCTTAGCCTATACAGGTGTAGGACCTTCAGCACCATTTCAAGTTCCTAAGGATATTGATTGTCACATGGAGGGAATAGTCTTACGTGTTGTTTATTCATCAAGATCTGAAAACATGGCAGCTGAATGTCTTACCAGTGTTTTGATCGTTAATTACACAAAGTGCACCATCCATATTTACAACCGAGACACAATCATGTCCTTTAATGATGAAGATTGGAAGAATTTAACATCAAATCTAGGACCTGGTGACGATGTGAAGATTTATGTAGCTTTTGGGCATGGATTGATTGTTAAGAAGACAATTGTGTATCTAGTATCTGGCCAGTCAATTATTGTGGAAGTTGATGATGCTAACATGGAAGTGGAGCCACCAGAGGAAGTGAACATGCAGCCGTCCCTTGAAGTGAAGGTGGAGCAATCACCAAAGCCCAGAAGTATATTTACAAGACTTCCAAACAGAATAGGTGCATTTTTATGCTTGAACCAGCAGAGAGATAAAGGCTCAAACAATTTTTGA 3165 0.3905 MAAASSSSSDPQWIHDVFINFRGEDTRKNIVSHLYAALSNAGINTFLDDENLRRGMELGPELRQAIEGSRISIVVFSKTYTSSTWCLKELEQIMKCRRNHGQMVVPIFYNVDPSDLRHQKDGFGKALKSTAKKRSLSGERMDNLYSKWKSVLTEAATISGWHTKNFGNDAELVSRTVEDVRRKLSSRSLNITEHPVGLDTRVQEVTRLFDIQTNKLCLIGIWGMGGSGKTTTARAIYNKINSKFVSHSFIENIREVCNRGDQGIILLQEQLLSNVLKPSQKIHSTASGITTIEKLYMGKRALIVLDDVSTFEQVEALCGNRKCFGSGSVLIVTSRDVNILKKLQVHYIYSIKEMDEIKSLELFSWHAFKEPSPKDDFRELSSSIVTYCRGLPLALEVIGSYLRARTIKEWRSVLLTLERIPDNQVHEKLRISYDGLKKDTEKDIFLHICCFFIGKDRAYVSEIIDGCDLYAGIGITVLIERSLLKVEKNNKLGMHDLLRDMGREIVRERSIKLLGKRCRLWFHEDAHKVLTEKSGTETVEGLVLKSQSTSNVCIETDTFKEMKNLRLLRLDHVDLFGAFKYLSKELRWLHWKRFSREYIPDDFYLENLVVFELKHSNIKRVWNETKLMDKLKILNLSHSKYLTSTPDFSKLPNLEKLIMKDCPRLSEVHQSIGDLRNLLLINLEGCTSLSNLPENINQLKSLTTLILSGCSKIDRLEEGIVQMESLTTLVIKGTGVKEVPYSVVRLNSIGYISLCGYEGLSQDVFHSFIQSWMSPTMNFSLNNLDFLTPIVRSLQQLRTVWIQCHSENQLTQELKMIFDDQYDTNYTESEAMQSPNDFLRSHLIGMRSLPTVMDTLGKRISQGLTTTNGSSNFFLPGGNHPSCLAYTGVGPSAPFQVPKDIDCHMEGIVLRVVYSSRSENMAAECLTSVLIVNYTKCTIHIYNRDTIMSFNDEDWKNLTSNLGPGDDVKIYVAFGHGLIVKKTIVYLVSGQSIIVEVDDANMEVEPPEEVNMQPSLEVKVEQSPKPRSIFTRLPNRIGAFLCLNQQRDKGSNNF* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3798 1054 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 989 - -
Tpr4g3798 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Tpr4g3798 1054 PRINTS Disease resistance protein signature 218 233 - -
Tpr4g3798 1054 PRINTS Disease resistance protein signature 295 309 - -
Tpr4g3798 1054 PRINTS Disease resistance protein signature 388 402 - -
Tpr4g3798 1054 PRINTS Disease resistance protein signature 697 713 - -
Tpr4g3798 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 161 IPR035897 -
Tpr4g3798 1054 SMART till_3 14 158 IPR000157 GO:0007165
Tpr4g3798 1054 Pfam NB-ARC domain 207 420 IPR002182 GO:0043531
Tpr4g3798 1054 Gene3D - 354 437 IPR042197 -
Tpr4g3798 1054 Gene3D - 189 349 IPR027417 -
Tpr4g3798 1054 SUPERFAMILY L domain-like 550 803 - -
Tpr4g3798 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 989 IPR044974 GO:0006952
Tpr4g3798 1054 Gene3D - 9 188 IPR035897 -
Tpr4g3798 1054 ProSiteProfiles TIR domain profile. 13 184 IPR000157 GO:0007165
Tpr4g3798 1054 Gene3D Ribonuclease Inhibitor 525 820 IPR032675 -
Tpr4g3798 1054 Pfam TIR domain 15 187 IPR000157 GO:0007165
Tpr4g3798 1054 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3798 Tpr-Chr4 43945282 43949638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3798 6 746 WRKY Transcription Factor Family AT4G12020 29.634 2.80e-77 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3798 - - mtr:MTR_8g011850 1216.83