Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3792 ATGGCAGCTGCGTCTTCTTCATCCTCCGATCCTCAATGGATACACGACGTGTTCATCAATTTCAGGGGGGAAGACACACGCAAGAACATCGTCTCTCATCTCTACGCCGCCCTCTCGAATGCCGGAATCAATACTTTTCTTGATGACGAGAATCTTAGAAGGGGAATGGAGCTGGGACCAGAACTACGGCAAGCAATAGAAGGTTCTCGTATTTCCATAGTTGTCTTCTCCAAAACTTATACCTCATCTACTTGGTGTCTTAAAGAGCTTGAACAAATCATGAAATGCCGAAGAAATCATGGCCAGATGGTTGTGCCCATCTTTTACAACGTTGACCCATCGGATTTGCGTCATCAGAAAGATGGTTTTGGAAAAGCTTTGAAATCAACTGCAAAAAAAAGATCCTTAAGTGGGGAAAGGATGGATAATCTATATTCCAAGTGGAAGAGTGTGCTAACTGAAGCTGCAACTATATCCGGTTGGCATACCAAAAATTTCGGGAATGACGCTGAACTAGTTTCTAGAACTGTTGAAGACGTTAGGAGAAAGCTAAGCAGCAGATCATTGAATATTACCGAACATCCGGTTGGATTGGATACTCGTGTGCAAGAAGTGACTCGGTTATTTGATATTCAAACAAACAAACTTTGCTTGATAGGGATCTGGGGTATGGGTGGATCGGGTAAAACAACAACAGCCAGAGCTATCTACAACAAAATTAATAGCAAATTTGTGAGTCACAGTTTCATTGAGAATATCAGAGAAGTCTGTAACAGAGGTGATCAAGGGATTATTCTTTTACAAGAACAACTTTCAAATGTCCTGAAACCAAGTCAGAAAATACACAGCACGGCATCCGGGATAACCACAATTGAGAAACTATATATGGGGAAAAGGGCACTCATTGTACTTGACGATGTTAGCACATTTGAGCAAGTAGAAGCCCTATGTGGAAATCGTAAATGTTTTGGTTCGGGAAGTGTATTGATTGTTACATCTAGAGATGTAAACATACTTAAGAAACTTCAAGTTCATTATATCTATAGCATAAAGGAAATGGACGAAATCAAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAAGGAACCGAGTCCAAAAGATGACTTCAGAGAACTCTCAAGCAGCATAGTTACTTACTGTAGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTACTTACGTGCCAGGACAATAAAAGAATGGAGAAGTGTACTATTAACGTTAGAGAGAATTCCTGATAATCAAGTGCATGAAAAACTGAGAATAAGCTATGATGGTTTAAAGAAGGATACGGAAAAGGATATATTTCTTCACATATGTTGTTTCTTTATTGGTAAGGACAGAGCCTATGTTTCAGAGATTATAGACGGCTGTGACCTTTATGCTGGTATTGGAATAACTGTCCTCATAGAGCGTAGCCTCCTAAAAGTTGAAAAGAATAATAAGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTTCGTGAAAGATCAATAAAACTGCTTGGGAAGCGTTGTCGATTGTGGTTTCACGAGGATGCACATAAAGTATTGACAGAAAAATCTGGAACAGAAACTGTGGAAGGATTGGTTTTGAAGTCGCAAAGCACCAGCAATGTTTGTATCGAAACTGATACTTTCAAGGAGATGAAGAATTTGAGACTTTTACGACTTGATCACGTTGATCTTTTTGGAGCTTTTAAGTATCTTTCTAAAGAACTGAGATGGCTCCATTGGAAGCGTTTTAGTCGTGAATATATACCTGATGACTTTTATCTGGAAAATCTTGTTGTTTTTGAGTTAAAACATAGCAATATTAAACGAGTTTGGAATGAAACCAAGTTGATGGACAAGCTGAAAATTCTCAATCTCAGTCATTCCAAGTACTTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGACTGTCCACGCTTGTCTGAGGTTCACCAGTCAATTGGGGATCTGAGGAATCTTCTTCTGATAAATTTGGAAGGCTGTACAAGTCTTAGCAATCTCCCAGAGAACATAAATCAATTGAAGTCTTTGACCACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAGGTTGGAAGAAGGCATAGTGCAGATGGTATCCTTGACAACACTGGTCATAAAAGGTACAGGTGTCAAAGAGGTGCCATATTCAGTGGTAAGATTGAACAGCATCGGGTATATATCTCTATGTGGATATGAAGGATTATCACAAGATGTTTTTCATTCTTTCATTCAGTCTTGGATGTCACCAACAATGAATTTTTCCCTTAATAACTTGGACTTTCTAACACCAATAGTTAGGAGCCTTCAACAACTCAGAACTGTTTGGATACAATGCCACTCAGAGAATCAACTAACTCAAGAATTAAAAATGATTTTTGATGATCAATATGATACTAATTATACTGAATCAGAAGCAATGCAAAGCCCAAATGATTTCTTGAGATCGCATTTGATTGGAATGAGAAGTCTCCCCACAGTCATGGATACTCTTGGCAAGAGAATTTCACAGGGATTAACAACCACCAATGGTTCGAGCAATTTTTTCCTTCCGGGTGGCAATCATCCTTCTTGCTTAGCCTATACAGGTGTAGGACCTTCAGCACCATTTCAAGTTCCTAAGGATATTGATTGTCGCATGGAGGGAATAGTCTTACGTGTTGTTTATTCATCAAGATCTGAAAACATGGCAGCTGAATGTCTTACCAGTGTTTTGATCGTTAATTACACAAAGTGCACCATCCATATTTACAACCGAGACACAATCATGTCCTTTAATGATGAAGATTGGAAGAATTTAACATCAAATCTAGGACCTGGTGACGATGTGAAGATTTATGTAGCTTTTGGGCATGGATTGATTGTTAAGAAGACAATTGTGTATCTAGTATCTGGCCAGTCAATTATTGTGGAAGTTGATGATGCTAACATGGAAGTGGAGCCACCAGAGGAAGTGAACATGCAGCCGTCCCTTGAAGTGAAGGTGGAGCAATCACCAAAGCCCAGAAGTATATTTACAAGACTTCCAAACAGAATAGGTGCATTTTTATGCTTGAACCAGCAGAGAGATAAAGGCTCAAACAATTTTTGA 3162 0.3912 MAAASSSSSDPQWIHDVFINFRGEDTRKNIVSHLYAALSNAGINTFLDDENLRRGMELGPELRQAIEGSRISIVVFSKTYTSSTWCLKELEQIMKCRRNHGQMVVPIFYNVDPSDLRHQKDGFGKALKSTAKKRSLSGERMDNLYSKWKSVLTEAATISGWHTKNFGNDAELVSRTVEDVRRKLSSRSLNITEHPVGLDTRVQEVTRLFDIQTNKLCLIGIWGMGGSGKTTTARAIYNKINSKFVSHSFIENIREVCNRGDQGIILLQEQLSNVLKPSQKIHSTASGITTIEKLYMGKRALIVLDDVSTFEQVEALCGNRKCFGSGSVLIVTSRDVNILKKLQVHYIYSIKEMDEIKSLELFSWHAFKEPSPKDDFRELSSSIVTYCRGLPLALEVIGSYLRARTIKEWRSVLLTLERIPDNQVHEKLRISYDGLKKDTEKDIFLHICCFFIGKDRAYVSEIIDGCDLYAGIGITVLIERSLLKVEKNNKLGMHDLLRDMGREIVRERSIKLLGKRCRLWFHEDAHKVLTEKSGTETVEGLVLKSQSTSNVCIETDTFKEMKNLRLLRLDHVDLFGAFKYLSKELRWLHWKRFSREYIPDDFYLENLVVFELKHSNIKRVWNETKLMDKLKILNLSHSKYLTSTPDFSKLPNLEKLIMKDCPRLSEVHQSIGDLRNLLLINLEGCTSLSNLPENINQLKSLTTLILSGCSKIDRLEEGIVQMVSLTTLVIKGTGVKEVPYSVVRLNSIGYISLCGYEGLSQDVFHSFIQSWMSPTMNFSLNNLDFLTPIVRSLQQLRTVWIQCHSENQLTQELKMIFDDQYDTNYTESEAMQSPNDFLRSHLIGMRSLPTVMDTLGKRISQGLTTTNGSSNFFLPGGNHPSCLAYTGVGPSAPFQVPKDIDCRMEGIVLRVVYSSRSENMAAECLTSVLIVNYTKCTIHIYNRDTIMSFNDEDWKNLTSNLGPGDDVKIYVAFGHGLIVKKTIVYLVSGQSIIVEVDDANMEVEPPEEVNMQPSLEVKVEQSPKPRSIFTRLPNRIGAFLCLNQQRDKGSNNF* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3792 1053 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 988 - -
Tpr4g3792 1053 Gene3D - 189 348 IPR027417 -
Tpr4g3792 1053 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 161 IPR035897 -
Tpr4g3792 1053 Pfam NB-ARC domain 207 419 IPR002182 GO:0043531
Tpr4g3792 1053 SMART till_3 14 158 IPR000157 GO:0007165
Tpr4g3792 1053 Gene3D - 9 188 IPR035897 -
Tpr4g3792 1053 ProSiteProfiles TIR domain profile. 13 184 IPR000157 GO:0007165
Tpr4g3792 1053 Gene3D - 353 436 IPR042197 -
Tpr4g3792 1053 Pfam TIR domain 15 187 IPR000157 GO:0007165
Tpr4g3792 1053 Gene3D Ribonuclease Inhibitor 525 819 IPR032675 -
Tpr4g3792 1053 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 988 IPR044974 GO:0006952
Tpr4g3792 1053 PRINTS Disease resistance protein signature 218 233 - -
Tpr4g3792 1053 PRINTS Disease resistance protein signature 294 308 - -
Tpr4g3792 1053 PRINTS Disease resistance protein signature 387 401 - -
Tpr4g3792 1053 PRINTS Disease resistance protein signature 696 712 - -
Tpr4g3792 1053 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Tpr4g3792 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Tpr4g3792 1053 SUPERFAMILY L domain-like 549 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3792 Tpr-Chr4 43838599 43842879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3792 6 745 WRKY Transcription Factor Family AT4G12020 29.542 4.03e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3792 - - mtr:MTR_8g011850 1207.97