Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3787 ATGGCACAAGAAACCGTTTCTGGTGCTGAATCACCACAGCGTCGTCAAGGTTTATTACGAGATCAAGTTCAACTTATTAAAAGAAAGGATTCATCATCTGATCGTTATGAAATTGTTCCAATTCAAGATTCTTTATCTTTTGAGAAAGGATTTTTCATTGTTATTCGTGCTTGTCAGTTATTGGCTCAAAATAATGATGGAATTGTGTTAGTTGGAGTTGCTGGTCCTTCTGGTGCTGGCAAAACTGTTTTTACTGATAAGGTTTTGAGTTTTATGCCGAGTATTGCTGTTATATCCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGCTCAGGTTCCGATATATGATTTCAAGTCTAGTTCTCGCATTGGATACAGGACTATTGAAGTCCCTAGCTCTCGTATTGTAATCATTGAAGGCATATATGCCTTAAGTGAGAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAACGTGTTTTACGAGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTGAAAACAGCGCATATAAAAATTATTAACAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAGCTGTGACAGTGGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAAACCAATGAGGAAACATATGACATATATCTTCTACCCCCTGGAGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACAGGGATGGGAAGTACAATCTTATGTTTGAGGAATGGGTTACGGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTACAAGGGAAAGATAGAAACTATGTTAAATTTGTGGCGGAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAACTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGTCAAAACTCAGCATAGAAGATGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCCAGAGCTTCTGCAGATAGGAGGATGAAGTATCTTAATCGTGGTGTTTCACAGTCATATTCAAATCAAAGGGACAAGATGCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAATGGGAGAGCTCTAGAATCACCTGCTCAGATGGCCAACCAAGTAGTTATCATTCAACTTTCTGATCAAATTTCCACACTAAATGAAAGAATGGACGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGACGTCAAAAAAGTTTCAGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCTGCAATGGCTCTGTCCCCACTTCTCTCTTTATTACTGGATTAGGCAATGGTTCATTAACTGCTGGATCATTGCTTCCTCATTCTACATCTTCCTCTCAACTGGTTAGAGAGTCTCCCCTGATGGAAGAGGTATTACTTGTTGCTCGAGGACAGCGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTATGCATGAATACTTCGGAGAAAGATCGCGGCTGGGAAGAACAGACCAGGCAGGCAGTGTGCGTGAAGTTGAATCTGTTGCCATCCCCCTGGTTCTGACTCTGGCCATTGGTGCTGTTGGTGTGCTCTTGTTCAAGGGTTTGACATCTAAAAAATAA 1995 0.4015 MAQETVSGAESPQRRQGLLRDQVQLIKRKDSSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVLSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPAQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQNPTYILKSAKAVTVDQIKAVIAAEHTETNEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKSKLSIEDDLVSSPKEALSRASADRRMKYLNRGVSQSYSNQRDKMLPKLTKLAINNRSFNGRALESPAQMANQVVIIQLSDQISTLNERMDEFTSRIEELNSKFDVKKVSASQQNLASQAEACNGSVPTSLFITGLGNGSLTAGSLLPHSTSSSQLVRESPLMEEVLLVARGQRQIMHQLDTLSNLMHEYFGERSRLGRTDQAGSVREVESVAIPLVLTLAIGAVGVLLFKGLTSKK* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3787 664 Gene3D - 256 416 - -
Tpr4g3787 664 Coils Coil 503 530 - -
Tpr4g3787 664 ProSiteProfiles CYTH domain profile. 251 413 IPR023577 -
Tpr4g3787 664 Gene3D - 69 250 IPR027417 -
Tpr4g3787 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 239 IPR027417 -
Tpr4g3787 664 PRINTS Uridine kinase signature 68 85 - -
Tpr4g3787 664 PRINTS Uridine kinase signature 135 150 - -
Tpr4g3787 664 PRINTS Uridine kinase signature 191 201 - -
Tpr4g3787 664 PRINTS Uridine kinase signature 227 240 - -
Tpr4g3787 664 SUPERFAMILY CYTH-like phosphatases 263 410 IPR033469 -
Tpr4g3787 664 PANTHER URIDINE KINASE 6 652 - -
Tpr4g3787 664 Pfam CYTH domain 274 407 IPR023577 -
Tpr4g3787 664 Pfam Phosphoribulokinase / Uridine kinase family 71 239 IPR006083 GO:0005524|GO:0016301
Tpr4g3787 664 CDD UMPK_like 70 242 - -
Tpr4g3787 664 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3787 Tpr-Chr4 43778397 43786064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3787 70 239 PRT Gene Family AT5G40870 29.050 2.60e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3787 K00876 - gmx:100803122 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3787 4 43778397 43786064 Tpr4g3787 4 43778397 43786064 ECH
Tpr2g3638 2 39440878 39457748 Tpr4g3787 4 43778397 43786064 PCT