Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3780 ATGAACAGCAGCGAAAACAACCAAAACAGCACAGTAAAATCGTTAGATTTCAATAACTTAAAAGTTATCTCCGCCGTGGGACGCGGCGCCAAAGGCATCGTGTTCCTCGCAACAACCGGTAACCAGTCATCTAACGAGTGTGTTGCTCTTAAAGTAATATCAAAAGATCTTTTAAATCAGAAGAAATCAAAGAACAATCCAGAAGGTTCTGGAGAGTATAAGAGAGCTTCATTTGAACAAGAAGTGCTACGTCGTTTTGATCATCCACTTTTGCCACGGTTGCGTGGTGTTTTCGAAACGGAGAAAATCGTTGGATTCGCCATTGATTATTGCCATGGCGGTAATCTCCATTCTCTCAGAAAGAAACAATCTGAGAAAATGTTCTCCAATGACGCTATTAGGTTTTATGCAGCTGAATTGGTTCTAGCATTGGAATATCTTCATGATTCAGGAATAGTGTATAGAGATTTGAAGCCAGATAACGTGATGATTCAAGAAAACGGTCACATAATGCTAGTAGATTTCGATCTATCTACAAAGCTGAAACCTAAATCGCCACTTCAATCACTGAGTCATGACTCGTCAGATAGATCTAATTCTTCGAAGGAGAAACACGCGAATAAGCGATTGTTTTCGCGATTCTACCGTTGTAACTCGGGGATCTCGCCGTGTGACTCGGATTTTGAATTGCAAAATAGTGTGAACTCGATGAAACGGAACGAATCGGAATCGGTTGAGAAATCGAACTCGTTCGTTGGAACGGAAGATTACGTGGCACCTGAAATTGTAAACGGAAAAGGTCATGGTTACGAAGTTGATTGGTGGTCGTTAGGTGTCGTATTGTACGAAATGTTGTACGGAACGACGCCGTTTAATGGGATAAATAGGAAAGAAACGTTTTACAGGATTTTGTCAAAAGAACCTGAGTTAACGGGAGAGAAAACGGCGTTAAGGGATTTGATTAGGAAATTGTTGGAAAAGGATCCTGACCGTAGGATCAAGGTAGATGAAATCAAGGGTCATGATTTCTTTAAAGGAGTAAAGTGGGACACGGTGTTGCAATTAGCAAGACCACCTTATATTCCTCCTTTGATTGAAGTTGAGAATGAGAAAACTGTGGGGTATAGTAAAAGCTATGTGGAGGTGTTTGTTCATGAAGTGTTTTTTCCTAAGGGTGATGATGGTAATAATGAAGAGAAAAAGAGTAATAAAATGGAAGAAAAGAAGGGTAATGGTGAGGAAAAGAAGGTGTGGATTGATAAGTTGAGTAGTAGTCTCAATGAGGATGATGATTTTTTAATTTTTTGA 1308 0.3976 MNSSENNQNSTVKSLDFNNLKVISAVGRGAKGIVFLATTGNQSSNECVALKVISKDLLNQKKSKNNPEGSGEYKRASFEQEVLRRFDHPLLPRLRGVFETEKIVGFAIDYCHGGNLHSLRKKQSEKMFSNDAIRFYAAELVLALEYLHDSGIVYRDLKPDNVMIQENGHIMLVDFDLSTKLKPKSPLQSLSHDSSDRSNSSKEKHANKRLFSRFYRCNSGISPCDSDFELQNSVNSMKRNESESVEKSNSFVGTEDYVAPEIVNGKGHGYEVDWWSLGVVLYEMLYGTTPFNGINRKETFYRILSKEPELTGEKTALRDLIRKLLEKDPDRRIKVDEIKGHDFFKGVKWDTVLQLARPPYIPPLIEVENEKTVGYSKSYVEVFVHEVFFPKGDDGNNEEKKSNKMEEKKGNGEEKKVWIDKLSSSLNEDDDFLIF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3780 435 SMART serkin_6 20 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3780 435 Gene3D Transferase(Phosphotransferase) domain 1 115 185 - -
Tpr4g3780 435 Gene3D Transferase(Phosphotransferase) domain 1 244 363 - -
Tpr4g3780 435 MobiDBLite consensus disorder prediction 394 413 - -
Tpr4g3780 435 Pfam Protein kinase domain 227 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3780 435 Pfam Protein kinase domain 22 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g3780 435 SUPERFAMILY Protein kinase-like (PK-like) 17 378 IPR011009 -
Tpr4g3780 435 PANTHER FLIPPASE KINASE 1-RELATED 11 414 - -
Tpr4g3780 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Tpr4g3780 435 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Tpr4g3780 435 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 11 414 - -
Tpr4g3780 435 ProSiteProfiles Protein kinase domain profile. 20 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3780 Tpr-Chr4 43693763 43696242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3780 13 435 AGC Kinase Gene Family AT3G25250 55.245 9.15e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tpr4g3780 Pkinase 5.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3780 K20714 - gmx:100785773 560.066