Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3770 ATGGAAAACAAAGACACCTCAAAACTTCCAAACCAAACTCATCAAACTCACAACAACAAAAACATGTCTTTAATCTCTCATGAAATAGATAAATCCAATGAGAACAAAAAAACTAGTACTCTCAAGAAAATTCCAAAAATATCAAACAAGGGTCAGAAAAAGTATCTAGGAGTAAGACAGAGACCTTCAGGAAGATGGATAGCTGAGATCAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACATTTGACAGAGCAGAAGATGCTGCTATGTCTTATGACTCTGCTGCAAGAATTCTTAGAGGAAGAAATGCAAAAACAAATTTTCCAAATACTCATGAACAAGATTTCAGCATTTTAGGAAAGAATCCAAGAGCTTTTCAGCTTCTTAAACATGCAATGATGAAAAACCATGCAGTTTCATCTTCTTCATCTGTTTATTCTAGTTTCATGATGCCATGGAAAAATGATCAGCTCGACGACGCGATTGTCGAAGAAACTATTGTTTGTTCTGTTGCTGATGAAGGTGAAGGTTCTGCTATAGGGTGTAGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAATTAG 618 0.3544 MENKDTSKLPNQTHQTHNNKNMSLISHEIDKSNENKKTSTLKKIPKISNKGQKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAAMSYDSAARILRGRNAKTNFPNTHEQDFSILGKNPRAFQLLKHAMMKNHAVSSSSSVYSSFMMPWKNDQLDDAIVEETIVCSVADEGEGSAIGCSGISFGSSKVYSSVVVAPSFN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3770 205 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Tpr4g3770 205 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 MobiDBLite consensus disorder prediction 8 26 - -
Tpr4g3770 205 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Tpr4g3770 205 MobiDBLite consensus disorder prediction 1 39 - -
Tpr4g3770 205 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tpr4g3770 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 204 - -
Tpr4g3770 205 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3770 Tpr-Chr4 43637333 43638088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3770 39 112 AP2-EREBP Transcription Factor Family AT5G19790 60.000 9.60e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g3770 AP2 1.5e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3770 4 43637333 43638088 Tpr4g3770 4 43637333 43638088 ECH