Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3764 ATGGATCCCATGGATATCGTCGGAAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATAATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGACACCCAAGATCTATTGATTGAGTGCTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAATGAAGTATGTAGTAGGGAGGACAAACGAACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTAGTGATTACATTGAAGAAGTTTGTGCAGCATACGAACAGCACAAGCTGGAGACCATGGACTCTTTAAAAGGCGGTAAATGGAGCAATGCAGCTGAAATGACCGAGGAAGAAGCATTAGCGGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAACGGTGGGGCCATTGCTTCGAAGCAGCCAGATGGTGACCAAAATTTAGATAGCTAA 468 0.4338 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFSDYIEEVCAAYEQHKLETMDSLKGGKWSNAAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDGDQNLDS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3764 155 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Tpr4g3764 155 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Tpr4g3764 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Tpr4g3764 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Tpr4g3764 155 Coils Coil 114 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3764 Tpr-Chr4 43560797 43564398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3764 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 80.519 9.27e-88 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr4g3764 CBFD_NFYB_HMF 9.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3764 K21751 - gmx:100807912 278.1