Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3761 ATGGCAGAACCAGAAAACAACCTGCAAATTTCTTCATCAATGGATGAAACCAATAACAAGCATAAACATAAGAAGAAGAAGCACGACAAAAAGAGACCCCGTGATATTGTTGAGGAAGAAGAAGAAGAAGAGAATGTGAAAAATACTCATAGCAATGGAGAAATCTCGAAAAAGAAGAAGAAGAATAAGGAGGAGGAGGAGAATGAAGTGGAAGTAGAAACTGAATTGGAAGAGAAAAAAGTGAAGAACAATAGTGGTTCTGGAATTATGAGCAATGAATCATTTGCTTCTCTTGAATTGTCTAAATCTACTTCTAAAGCTATTATGGATATGGGATTCCAAAACATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGAATGGAAAAAATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTTGAGCTTTTGCACAAGCTTAAATTTAATCCTCGAGATGGAGCTGGTGTTGTTGTCATATGCCCCACTAGAGAGCTTGCTATTCAGACGCATGATGTTGCCAAGGAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCATCTAGAAAAAGTGAAGCTCAACACCTTGCTAAAGGGGTAAATATATTGGTAGCTACCCCTGGTCGTCTTCTGGATCATCTTCAAAATACTAAGAAATTCATTCATAATAAACTGAAGTGCCTCATTATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGATGAATTGAAGCAGATTCTCAAGATCCTCCCAAAGGACAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAAGAGACTCCTATCTATATTGATGTAGACGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTTATTGTCCCCTGCGCCAAGCGATTATTGGTTCTCTATTCCTTCTTGAAGAGGCATCACTCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACGTTTTTAATCACATCAATTTGCATTGTGCAAGTATTCATGGAAAACAAAAGCAACAGACCCGGACAACTACTTTCCTTGACTTCTGCAAAGCAGAAAAAGGGGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTGCACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGAAATTTCTTTGCTATCTGAAGGAAGCTAAGGTCCCTGTGAAAGAATATGCTTATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACCTGGAGAATATTGTTGGTGAAAATTATTTTTTGAACAAAATGGCTAAAGAAGCTTATAGATCATACCTATTAGCATACAATTCACATTCCATGAAGGATATATTCAGTGTGAAATGCCTTGATTTGCAGGAAGTTGCTGTTTCATTCTGTTTTTCGAACCCTCCAAATGTGAGCATTAACATAGACAGCGGCAATCAAAGGAAGAAAACACGTAAAGTTGATGGAAGTAGACATGGATTCAACCCAAACAATCCTTATGGAAAGCGAAATGCTGATGATAAGCGACAATTTGTGAGGCACTGA 1737 0.3892 MAEPENNLQISSSMDETNNKHKHKKKKHDKKRPRDIVEEEEEEENVKNTHSNGEISKKKKKNKEEEENEVEVETELEEKKVKNNSGSGIMSNESFASLELSKSTSKAIMDMGFQNMTQIQARAIPPLLNGKNVLGAARTGSGKTLAFLIPAVELLHKLKFNPRDGAGVVVICPTRELAIQTHDVAKELLKYHSQTLGLIIGGSSRKSEAQHLAKGVNILVATPGRLLDHLQNTKKFIHNKLKCLIIDEADRILEANFEDELKQILKILPKDRQTALFSATQTKKVEDLARLSFQETPIYIDVDDGRKKVTNEGLLQGYVIVPCAKRLLVLYSFLKRHHSKKVMVFFSSCNSVKFHADVFNHINLHCASIHGKQKQQTRTTTFLDFCKAEKGVLLCTDVAARGLHIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLCYLKEAKVPVKEYAYDEKKVANVQSHLENIVGENYFLNKMAKEAYRSYLLAYNSHSMKDIFSVKCLDLQEVAVSFCFSNPPNVSINIDSGNQRKKTRKVDGSRHGFNPNNPYGKRNADDKRQFVRH* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3761 578 CDD DEADc_DDX18 104 301 IPR044773 GO:0003724|GO:0005524
Tpr4g3761 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 300 IPR027417 -
Tpr4g3761 578 MobiDBLite consensus disorder prediction 1 15 - -
Tpr4g3761 578 SMART helicmild6 353 434 IPR001650 -
Tpr4g3761 578 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 46 572 - -
Tpr4g3761 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 473 IPR001650 -
Tpr4g3761 578 PANTHER RNA HELICASE 46 572 - -
Tpr4g3761 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Tpr4g3761 578 CDD SF2_C_DEAD 314 444 - -
Tpr4g3761 578 SMART ultradead3 112 317 IPR014001 -
Tpr4g3761 578 Coils Coil 55 82 - -
Tpr4g3761 578 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Tpr4g3761 578 Pfam Helicase conserved C-terminal domain 327 433 IPR001650 -
Tpr4g3761 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 299 IPR014001 -
Tpr4g3761 578 Gene3D - 39 303 IPR027417 -
Tpr4g3761 578 MobiDBLite consensus disorder prediction 540 578 - -
Tpr4g3761 578 SMART DUF4217_3 474 537 IPR025313 -
Tpr4g3761 578 Gene3D - 314 550 IPR027417 -
Tpr4g3761 578 MobiDBLite consensus disorder prediction 1 85 - -
Tpr4g3761 578 Pfam Domain of unknown function (DUF4217) 475 535 IPR025313 -
Tpr4g3761 578 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 245 253 IPR000629 -
Tpr4g3761 578 MobiDBLite consensus disorder prediction 32 67 - -
Tpr4g3761 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3761 Tpr-Chr4 43537913 43543985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3761 92 453 Eukaryotic Initiation Factors Gene Family AT3G13920 30.579 1.63e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3761 K13179 - gmx:100798885 897.886