Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3725 ATGGCTTCACCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTACTCAAATCAGTTGGAGAACAAACTGATCAAACCTACAAACTCGAAGAATTTCTTTCTCGCTTAGAAGAAGAACGTCTCAAAATCGACGCTTTCAAGCGCGAACTTCCACTTTGCATGCAACTTCTCACAAACGCTATGGAAGCATCAAAGCAACAACTTCAAGCTTTCAAAGTGAATCAAGGAAATACAACAAAACCAATTCTTGAAGAGTTCATACCAGTGAAGCAATTAATAACTTCATCGGAAAGTATCGAAAAAACAACAAATAACAATGTATGTGATAAGGCGAATTGGATGACAAGTGCACAACTATGGAGTCAAACAAGTGAAGGAACACAACAACAAAATTCAACAAAAGAAATTATTCCTGAAAATAATAATATTGGATTTAACATTAGTCCTAAACATAGAAATGGTGGAGCTTTTTTACCATTCTCAAAAGAAAGAAATAATAACTCTTCTTCTTGTGTTCCTGAACTTGCACTTGGTTCACCTCAGAAAGAGATTGTTGTTGATGATAAGAAACATCATGTTGGAGAAGGAGAGAAGAGAGAAAACAATGAAGAAAAAGAGAGTCCAATAGGATCATCAAATGGACAGACAACAAACAACAATAGTACAAATCAAACTCATAGGAAAGCAAGAAGATGTTGGTCACCTGATTTGCATAGAAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTACACACAAGAAGACCAAGTCCAAGTTCCCAAACAGGTGCACCAGCAGCACAGTTAGTTGTTTTAGGAGGTATATGGGTCCCACCAGAATATGCAACTGCATCACATACAGGAGTAGGAACCCCTACTCTTTATGGTGCACATCCTACTTCTCATCATCTTACTTTGCCACACTATTGTACTGCTCCTGGACAGGAGCAGTATTATACTACTGCGCCGCCGCAGCATCAGCAGCTACTTCCGCCGCCTCACCATATGCATCATGTTTACAAGACTACGCCGCATGGCCAGGGTTCACCGGAGACAGGTGGAGATGGGTTGGAGAGTATTGAGAACGGGAAGTCGGAGAGTAGTAGCTGGAAAGATGGGAGTTCTGAGGAGAATGAAGGGGAGAGGAAAGGGTTTGTTGAAGAGAGTAATGGGAGTGATATCACTCTCAAATTTTAA 1302 0.4048 MASPSELGLDCKPHSYSMLLKSVGEQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFKVNQGNTTKPILEEFIPVKQLITSSESIEKTTNNNVCDKANWMTSAQLWSQTSEGTQQQNSTKEIIPENNNIGFNISPKHRNGGAFLPFSKERNNNSSSCVPELALGSPQKEIVVDDKKHHVGEGEKRENNEEKESPIGSSNGQTTNNNSTNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSSQTGAPAAQLVVLGGIWVPPEYATASHTGVGTPTLYGAHPTSHHLTLPHYCTAPGQEQYYTTAPPQHQQLLPPPHHMHHVYKTTPHGQGSPETGGDGLESIENGKSESSSWKDGSSEENEGERKGFVEESNGSDITLKF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3725 433 MobiDBLite consensus disorder prediction 405 423 - -
Tpr4g3725 433 Coils Coil 33 53 - -
Tpr4g3725 433 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 433 - -
Tpr4g3725 433 Gene3D - 231 289 - -
Tpr4g3725 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 433 IPR044787 GO:0003700|GO:0006355
Tpr4g3725 433 MobiDBLite consensus disorder prediction 186 236 - -
Tpr4g3725 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 289 IPR017930 -
Tpr4g3725 433 MobiDBLite consensus disorder prediction 211 232 - -
Tpr4g3725 433 Coils Coil 58 78 - -
Tpr4g3725 433 MobiDBLite consensus disorder prediction 187 210 - -
Tpr4g3725 433 MobiDBLite consensus disorder prediction 378 433 - -
Tpr4g3725 433 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Tpr4g3725 433 SUPERFAMILY Homeodomain-like 229 290 IPR009057 -
Tpr4g3725 433 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 287 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3725 Tpr-Chr4 43152433 43155127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3725 1 433 G2-like Transcription Factor Family AT2G03500 49.679 1.76e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr4g3725 Myb_DNA-binding 9.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3725 - - gmx:100797015 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3725 4 43152433 43155127 Tpr4g3725 4 43152433 43155127 ECH