Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3724 ATGACGTTGGACGACGATAGCTCCATCTATGTTGGAGGTCTCCCCTACGATGCCTCCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCTATCCTTGATGTCAAGATTATCAATGACCAACGTACAATAGGAAAATGCTATTGTTTTGTTACTTTCACAAACCCTAGGTCAGCAATTGATGCTATCAATGACATGAATGGAAGAACTATTGGTGGACGTGTGGTTAAAGTTAATGGGGTGAAGAGTCGTGGTGGTGGTAGTGGTGGTGGTGGTGGCAGATTGAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGTGATTGGGATCGTGGTGGCAGAGATAGAGATGTTCGAGACCAAGATTATGATCGTGGCAGAGTTCGAGACGAAGATTATGATCATGGTAATATGAAAGATGGATACAGGAATAGAGGCAATGATTGGACTCGGCTTCGTGATAGGTCTCGAGATCGTGATAGGTCCCGAGACCATGAGAGGGATAGGGATAGAAGAGTTGAGCATATACAAGATTATGCTGTTCAAGCTAGAGAAAGCATCTTAGACCGTGACAGGGATAGGGATAGACGAGTTGAGCATATGCAAGATTATGATGTTCAAGCTAGAGAAAGCATGTTAGACCGTGATAGATCCCGAGACCGTGATAGGGACAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGCCCGTGATAGATCCAGAGACCGTGATAGGGGTAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAACTAGAGAAAGCATGTTGAACCGTGATAGATCCCGAGACCTTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGATCCCGAGACCTTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTGATAGATCCCGAGACCTTGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTGACAGGGATAGGGATAGAAGAGTTGAACATGTGCAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGACCGTAACGGGGATAGGGATAGAAGAGTCGAACAAATACAAGATTATGATGATCAAGCTAGAGAAAGCATGTTAGATGGTGATTGGAATCGTGACGATGATAGGGCTGAATATGAACAAGGAAACAGCAGGGTACATGGTGGAGATGTGGATAAAGATCATACCTTAGATGTGGATACAGACAGAAAGCTGGATAGGATTAGTGATCCTGATAAAAGTTTTGATGAACATAAAAAAGAACAATTAAGGAGAAACATCGATTTGAATGTGACAAATCAAAACAGTCCTTCAGATTCTAATGAGGACCACAATGATGAGCTAGAGGATGAATTTGAGAGGTCAATGCAGAGGCTTGATCAACTAAAAAAGGAGGTTTCTAAGATGGAAGAGGGATTGGAAGAGAGAAGAATTGATGTTATGGAGTTACAAAAGCACTCTAAGAAACTGGAGGATGCGGTGATTAATGCAAAGAAACAATCTTTATATCGCCAGATGCAGTTGAGCAAGCTGCATGAATGTTTTCTGCAAGTGCAAGAATCCACAGAAAGACTTAAGACTAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCAGTAATGTTTGAGAGTGATGGTGATGGCGATGGTGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAGATAG 1836 0.4123 MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVKSRGGGSGGGGGRLNFGRERERYYHHNDERNGDWDRGGRDRDVRDQDYDRGRVRDEDYDHGNMKDGYRNRGNDWTRLRDRSRDRDRSRDHERDRDRRVEHIQDYAVQARESILDRDRDRDRRVEHMQDYDVQARESMLDRDRSRDRDRDRRVEHVQDYDDQARESMLARDRSRDRDRGRRVEHVQDYDDQTRESMLNRDRSRDLDRDRRVEHVQDYDDQARESMLDRDRSRDLDRDRRVEHVQDYDDQARESMLDRDRSRDLDRDRRVEHVQDYDDQARESMLDRDRDRDRRVEHVQDYDDQARESMLDRNGDRDRRVEQIQDYDDQARESMLDGDWNRDDDRAEYEQGNSRVHGGDVDKDHTLDVDTDRKLDRISDPDKSFDEHKKEQLRRNIDLNVTNQNSPSDSNEDHNDELEDEFERSMQRLDQLKKEVSKMEEGLEERRIDVMELQKHSKKLEDAVINAKKQSLYRQMQLSKLHECFLQVQESTERLKTSEKEFQALVDSVMFESDGDGDGGLGQLTNGSLDGR* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3724 611 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Tpr4g3724 611 SMART rrm1_1 8 80 IPR000504 GO:0003723
Tpr4g3724 611 SUPERFAMILY RNA-binding domain, RBD 4 113 IPR035979 GO:0003676
Tpr4g3724 611 CDD RRM_SF 9 80 - -
Tpr4g3724 611 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 244 - -
Tpr4g3724 611 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 333 607 - -
Tpr4g3724 611 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Tpr4g3724 611 MobiDBLite consensus disorder prediction 199 500 - -
Tpr4g3724 611 Gene3D - 2 98 IPR012677 -
Tpr4g3724 611 Coils Coil 494 549 - -
Tpr4g3724 611 MobiDBLite consensus disorder prediction 199 475 - -
Tpr4g3724 611 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 244 - -
Tpr4g3724 611 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 333 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3724 Tpr-Chr4 43145590 43151259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3724 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 1.00e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3724 - - cam:101499305 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3724 4 43145590 43151259 Tpr4g3724 4 43145590 43151259 ECH