Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3713 ATGGTGATTCCTATGTGTGGCCAAGAAGAACTCGAATTATCAAGAGACGGCAGTCAATATAGTCTCTCCACCGGAATTTTACCTTCTCTCGGCGCCAGAAGTAACCGGAGAGTTAAACTCCGACCTCTCATTATATCTCCTTATGACCGTCGGTACAGGGCCTGGGAAACTTTCCTGGTCATACTGGTTGTGTATACTGCTTGGGTATCTCCATTTGAATTTGGATTCCTTAAGAAACCACAAAAACCACTTTCTATTTCGGATAATATTGTCAATGCAATGTTTGCTATAGATATAGTTCTCACATTCTTTGTGGCTTTCATAGATAAAACTACCTATTTGTTCGTAGATGAACCAAAACAGATTGCTTGGAAATATGCAAAAACTTGGTTGGCATTTGATCTTATCTCCATCATTCCTTCAGAGCTTGTTGAAGGGCGACTATCTTATGGCCTATTCAACATATTTCGACTTTGGCGTCTTCGAAGAGTTAGCGCTTTGTTTTCCCGGCTTGAGAAGGACCGAAACTATAACTATTTTTGGGTTCGGTGCGCAAAGCTTATTTGTGTTACCCTTTTTGCTGTGCATTCTGCTGGATGCTTTTATTATCTTCTTGCTGCGCGTTATCATGATCCCCAAAAGACGTGGATTGGCCAAACAATGGCCGATTTCCTTCATCAGACCTTATGGACAAGATATGTGACGACTATTTACTGGTCGATCACTACTTTAACAACAGTTGGTTATGGAGATTTGCATCCGGTGAATGAAAGGGAGATGATCTTTGTCATATTTTATATGCTTTTTAATCTCGGATTAACAGCATATCTGATCGGTAACATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCGAGTTTTGCTCATAGGAATCAATTACCCGCTCGTTTACAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACTGACTCAGAAGGGTTGCAGCAACAAGAGACACTCGATTCGCTTCCTAAAGCTATCAGATCAAGCATTTCACATTATCTTTTCTATTCTTTGATGGATAAGGTCTACTTATTCAAAGGAGTTTCAAATGATTTGCTCTTTCAATTGGTATCGGAGATGAAGCCAGAGTATTTTCCACCTAAAGAAGATGTTATCTTACAAAATGAAGCTCCAACTGATTTTTACATTCTAGTCACTGGTGCTGTGGACTTGGTAGTTCTCAAAGGCGGGGTTGAACAGGTTGTCGGGGAGGCGAAAACTGGAGAGCTTTGTGGCGAGATTGGTGTACTTTGCTATAAGCCGCAACATTTTACCGTTAGAACCAAGCGATTAAGTCAACTGTTGAGGCTGAACCGTACCACGTTCTTGAACATTGTTCAAGCTAACGTGGGGGACGGAACCATAATCATGAATAATCTTCTTCAGCATTTGAAAGAGCTTAATGATCCAATCATGGAGGGAGTTTTAGTAGAGACAGAGAACATGTTAGCTCGCGGTAGAATGGACCTACCGGTTAGTCTATGCTTTGCAGCAGCAAGAGGAGATGATTTATTGATACATCAATTGTTGAAAAGGGGTTTGGATCCAAATGAATCTGACAACAATGGAAGGACAGCTCTGCATATAGCAGCATGTAAAGGAAAAGAAAACTGTGTTTTACTTCTGTTGGATTATGGGGCAAATCCGAATATTAGAGATTCGGATGGAAATGTAGCACTGTGGGAAGCTATACTTGGTGAACATGAATCAGTGACCAAACTTTTGGCAGAAAATGGTGCTACATTGCAAAGTGGTGATGTTGGTCAATATGCATGCAGTGCAGTTGAACAAAACAATCTCAATTTGTTGCAAGCAATTGTGCATTACGGAGGAGATATCACACTTCCAAATACCAGCGTTGGAACTACGGCTTTACACGTGGCAGTGTCCGAAGACAACGTGGAAATTGTCAAATTCCTCTTAGATCATGGTGCTAACATTGACACACCAGACAAATATGGTTGGACTCCAAGAGCTTTGGCTGATCAACAAGGACATACAGAAATCAAAGCCATTTTTGAAGCCAAAGGAGAACAACCTAAGACTCAATCTTTTGTTACTATGCCTATTCCTGAGAGGCAGGGTAGTAGTACTACTAAGGTGAGGTACCTTGGTAGATTTACAAGTGAGCCAACAATGCCTATAGCTCAAGATGGATCATTTCATGGAAATGATAATGGTTCGTGGATGCCACACCGTCCAAGGCGTAGGAATAATAACTTTCATAACTCACTCTTCGGGATAATGTCGGCGGCACACAAAGGAGAAAATGATCAGTTTTTCAGTGTTAAGATGAATAGCAATGCAAGGAATGGTATGAAGAATATTGCGCGTCCGACTAGAGTAATCATTAGTTGTCCTGAAAAAGGTGAGATTGCTGGGAAGCTTGTATTGCTACCTGAAAGTTTTAAAGATTTACTTGAGATTGGAGCTAAGAAATTTGGTATAGTTGTTACTAAGGTTGTTTGCAAAGTTGGAGCTGAAATTGATGATATTGAGGTCATAAGAGATGGTGATCATCTTGTTTTTGTTGGTGATGGTATGGAGCTAGATTCTAATTCTCCAACACACTCTAATGGTGTCATTCCATAG 2655 0.4049 MVIPMCGQEELELSRDGSQYSLSTGILPSLGARSNRRVKLRPLIISPYDRRYRAWETFLVILVVYTAWVSPFEFGFLKKPQKPLSISDNIVNAMFAIDIVLTFFVAFIDKTTYLFVDEPKQIAWKYAKTWLAFDLISIIPSELVEGRLSYGLFNIFRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHSAGCFYYLLAARYHDPQKTWIGQTMADFLHQTLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPARLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKGGVEQVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAARGDDLLIHQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIRDSDGNVALWEAILGEHESVTKLLAENGATLQSGDVGQYACSAVEQNNLNLLQAIVHYGGDITLPNTSVGTTALHVAVSEDNVEIVKFLLDHGANIDTPDKYGWTPRALADQQGHTEIKAIFEAKGEQPKTQSFVTMPIPERQGSSTTKVRYLGRFTSEPTMPIAQDGSFHGNDNGSWMPHRPRRRNNNFHNSLFGIMSAAHKGENDQFFSVKMNSNARNGMKNIARPTRVIISCPEKGEIAGKLVLLPESFKDLLEIGAKKFGIVVTKVVCKVGAEIDDIEVIRDGDHLVFVGDGMELDSNSPTHSNGVIP* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3713 884 Pfam Ankyrin repeats (3 copies) 615 690 IPR002110 GO:0005515
Tpr4g3713 884 Pfam Ankyrin repeats (3 copies) 515 604 IPR002110 GO:0005515
Tpr4g3713 884 ProSiteProfiles Ankyrin repeat region circular profile. 543 574 - -
Tpr4g3713 884 SMART ANK_2a 576 605 IPR002110 GO:0005515
Tpr4g3713 884 SMART ANK_2a 510 539 IPR002110 GO:0005515
Tpr4g3713 884 SMART ANK_2a 543 572 IPR002110 GO:0005515
Tpr4g3713 884 SMART ANK_2a 641 670 IPR002110 GO:0005515
Tpr4g3713 884 Gene3D - 511 696 IPR036770 -
Tpr4g3713 884 Gene3D - 55 286 - -
Tpr4g3713 884 ProSiteProfiles Ankyrin repeat profile. 543 575 IPR002110 GO:0005515
Tpr4g3713 884 ProSiteProfiles Ankyrin repeat region circular profile. 641 673 - -
Tpr4g3713 884 PANTHER POTASSIUM CHANNEL AKT1 9 870 IPR045319 GO:0005249|GO:0006813
Tpr4g3713 884 Pfam Cyclic nucleotide-binding domain 384 469 IPR000595 -
Tpr4g3713 884 SUPERFAMILY Ankyrin repeat 514 696 IPR036770 -
Tpr4g3713 884 ProSiteProfiles cAMP/cGMP binding motif profile. 365 467 IPR000595 -
Tpr4g3713 884 CDD CAP_ED 365 470 IPR000595 -
Tpr4g3713 884 SUPERFAMILY cAMP-binding domain-like 290 485 IPR018490 -
Tpr4g3713 884 ProSiteProfiles KHA domain profile. 802 882 IPR021789 -
Tpr4g3713 884 PANTHER K+ TRANSPORTER 1-RELATED 9 870 - -
Tpr4g3713 884 SUPERFAMILY Voltage-gated potassium channels 47 286 - -
Tpr4g3713 884 Pfam KHA, dimerisation domain of potassium ion channel 802 864 IPR021789 -
Tpr4g3713 884 Gene3D Jelly Rolls 329 490 IPR014710 -
Tpr4g3713 884 Pfam Ion transport protein 53 292 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr4g3713 884 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Tpr4g3713 884 SMART cnmp_10 365 482 IPR000595 -
Tpr4g3713 884 PRINTS Ankyrin repeat signature 544 559 IPR002110 GO:0005515
Tpr4g3713 884 PRINTS Ankyrin repeat signature 657 671 IPR002110 GO:0005515
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 65 72 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 233 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 259 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tpr4g3713 884 PRINTS EAG/ELK/ERG potassium channel family signature 277 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3713 Tpr-Chr4 43047510 43054795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3713 13 867 Ion Channels AT2G25600 62.976 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3713 K21867 - gmx:100819491 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3713 4 43047510 43054795 Tpr4g3713 4 43047510 43054795 ECH