Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3693 ATGGCTCATCCACACCACATTCCAACCTCTAGGATGTCACCACCCCGTTTCGCCACAAACAGTGATGCCATTGAGGTGGGGCCTCAATTCCCAGTGATCAATGACCGCACTGAGCAACATTCAGGTTTTGAGCAACAGTCCTTCAAGAGGGCAAGAATGATTGGTAACAATCGTTCTGATGCATTTCCGTGCCCTCCTCCTAGGGTGATGCAGCCTCCACCTCAATTGAACAGAGGAACTGGCCACATTTTCTACAAGACCCGCACTTGTACCAGGTTCTCGTTCGGCAATTGTAGGAACGGTGACAATTGCAACTTTGCTCACGGGGAGGAGGAGCTAAGGCAGCCACCACCAAACTGGCAAGACTATGTTGGACCGCGCAACGCACCCAAGGAGGATCGTGTGCAGGTAGGGAACTGGGATGATGATCAAAAAATCATCCAGAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAATGTCCTTATGGTGAGAAGTGTAGTTTTCTTCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAGTGTTCTGCAATAAGCATTGGGACTGTTGGTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTGACAAAGCAACCAAGGGGCACTTATTGGAAGACTAAGCTGTGTACCAAGTGGCAGAATACTGGAAGCTGTCCCTTTGGTGATGACTGTCACTTTGCTCATGGAGAAGCAGATTTACAAGCTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAATACTACAAAAGCTCCCGTTCCAGCTTCACCAAAAGCCTTGTCAGTTTCTGTTGCCAATGTTGAACCTGTTGCCCTCCCAGCAAGTCTACCTGTAGCAATGGAGGTGGAAATGGATGAGAAAGCTAAGAAGATCTTGTCAAGATCCAGATTAAAGAACAAGAAGTTGTTTGGCCTTTATGCTGACTGGATCAATGACATAGGTCCTCTTCCCAATCCCAACTATCCAAGTCCAATGGAAAATTAA 1053 0.4691 MAHPHHIPTSRMSPPRFATNSDAIEVGPQFPVINDRTEQHSGFEQQSFKRARMIGNNRSDAFPCPPPRVMQPPPQLNRGTGHIFYKTRTCTRFSFGNCRNGDNCNFAHGEEELRQPPPNWQDYVGPRNAPKEDRVQVGNWDDDQKIIQKMKLCKKFYNGEQCPYGEKCSFLHEDPAKFRADSWKSRECSAISIGTVGSPKSFGDGSDNLEGNSGVTKQPRGTYWKTKLCTKWQNTGSCPFGDDCHFAHGEADLQAPGGGIEAEAAVAIANTTKAPVPASPKALSVSVANVEPVALPASLPVAMEVEMDEKAKKILSRSRLKNKKLFGLYADWINDIGPLPNPNYPSPMEN* 351
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3693 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 110 IPR000571 GO:0046872
Tpr4g3693 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 250 IPR000571 GO:0046872
Tpr4g3693 350 Gene3D - 147 176 - -
Tpr4g3693 350 Gene3D - 79 115 - -
Tpr4g3693 350 Gene3D - 216 255 - -
Tpr4g3693 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 15 338 IPR045877 GO:0003729
Tpr4g3693 350 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Tpr4g3693 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 15 338 - -
Tpr4g3693 350 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Tpr4g3693 350 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Tpr4g3693 350 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Tpr4g3693 350 SUPERFAMILY CCCH zinc finger 222 254 IPR036855 GO:0046872
Tpr4g3693 350 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Tpr4g3693 350 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Tpr4g3693 350 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Tpr4g3693 350 Pfam CCCH-type zinc finger 151 172 IPR041367 -
Tpr4g3693 350 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr4g3693 Tpr-Chr4 42842583 42845538 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3693 225 254 C3H Transcription Factor Family AT1G68200 63.333 3.42e-08 52.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g3693 zf-CCCH 4.8e-11 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3693 - - aprc:113846184 370.548